miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24933 5' -52.6 NC_005284.1 + 23229 1.08 0.001982
Target:  5'- aGCCGUGUCGAGCACGCAAGCAACUAUc -3'
miRNA:   3'- -CGGCACAGCUCGUGCGUUCGUUGAUA- -5'
24933 5' -52.6 NC_005284.1 + 10755 0.75 0.330025
Target:  5'- cGCCGUGUCGAuCGCGCccGCGGCg-- -3'
miRNA:   3'- -CGGCACAGCUcGUGCGuuCGUUGaua -5'
24933 5' -52.6 NC_005284.1 + 47552 0.74 0.355553
Target:  5'- gGCCGacGUCGAGCAUGCGAGCcauCUu- -3'
miRNA:   3'- -CGGCa-CAGCUCGUGCGUUCGuu-GAua -5'
24933 5' -52.6 NC_005284.1 + 8786 0.72 0.460405
Target:  5'- cGCCGcGUCGAGCGCGCGcaccGUGACc-- -3'
miRNA:   3'- -CGGCaCAGCUCGUGCGUu---CGUUGaua -5'
24933 5' -52.6 NC_005284.1 + 9655 0.72 0.502414
Target:  5'- gGCCGagcucgCGGGCAUGCGAGCGAUg-- -3'
miRNA:   3'- -CGGCaca---GCUCGUGCGUUCGUUGaua -5'
24933 5' -52.6 NC_005284.1 + 45774 0.71 0.534986
Target:  5'- aGCCGUGUCGAcGCGCGgucgugaAGGCGugUu- -3'
miRNA:   3'- -CGGCACAGCU-CGUGCg------UUCGUugAua -5'
24933 5' -52.6 NC_005284.1 + 34062 0.71 0.555997
Target:  5'- cGCCGcacccccUGUCGAGCAgccCGCA-GCAGCg-- -3'
miRNA:   3'- -CGGC-------ACAGCUCGU---GCGUuCGUUGaua -5'
24933 5' -52.6 NC_005284.1 + 38342 0.7 0.60205
Target:  5'- cUUGUGcCGGGCGCGCuGGCGGCa-- -3'
miRNA:   3'- cGGCACaGCUCGUGCGuUCGUUGaua -5'
24933 5' -52.6 NC_005284.1 + 51467 0.69 0.647421
Target:  5'- cGCCGcGUCGAGCcCGCugAAGUucACUGUa -3'
miRNA:   3'- -CGGCaCAGCUCGuGCG--UUCGu-UGAUA- -5'
24933 5' -52.6 NC_005284.1 + 45546 0.69 0.647421
Target:  5'- aCCGuUGUCauuGC-CGCGAGCAACUGg -3'
miRNA:   3'- cGGC-ACAGcu-CGuGCGUUCGUUGAUa -5'
24933 5' -52.6 NC_005284.1 + 1697 0.69 0.647421
Target:  5'- cGCCaUGUCGAGCGCgaGCAcGCAAUc-- -3'
miRNA:   3'- -CGGcACAGCUCGUG--CGUuCGUUGaua -5'
24933 5' -52.6 NC_005284.1 + 25531 0.69 0.658754
Target:  5'- gGCCGUcGUCGuGCGCGCGucGCu-CUAUu -3'
miRNA:   3'- -CGGCA-CAGCuCGUGCGUu-CGuuGAUA- -5'
24933 5' -52.6 NC_005284.1 + 45207 0.69 0.67006
Target:  5'- gGCCGUGUCGAacgGCACGagauCGAGCGc---- -3'
miRNA:   3'- -CGGCACAGCU---CGUGC----GUUCGUugaua -5'
24933 5' -52.6 NC_005284.1 + 45650 0.69 0.67006
Target:  5'- cGUCGauaGcCGAGUGCGCGGGCGACg-- -3'
miRNA:   3'- -CGGCa--CaGCUCGUGCGUUCGUUGaua -5'
24933 5' -52.6 NC_005284.1 + 21241 0.68 0.692547
Target:  5'- aGCCGuUGcUCGAGC-CGCGcGCGGCa-- -3'
miRNA:   3'- -CGGC-AC-AGCUCGuGCGUuCGUUGaua -5'
24933 5' -52.6 NC_005284.1 + 7067 0.68 0.703704
Target:  5'- cGCCaUGUCGAGCGCGC---CAugUAc -3'
miRNA:   3'- -CGGcACAGCUCGUGCGuucGUugAUa -5'
24933 5' -52.6 NC_005284.1 + 11389 0.68 0.703704
Target:  5'- uGCCGgauguUGUCGAGCAUGCGcucgcuuuccAGCGAa--- -3'
miRNA:   3'- -CGGC-----ACAGCUCGUGCGU----------UCGUUgaua -5'
24933 5' -52.6 NC_005284.1 + 12208 0.68 0.736679
Target:  5'- gGCgGUGUggggacCGGGCACGUccacGAGCGACa-- -3'
miRNA:   3'- -CGgCACA------GCUCGUGCG----UUCGUUGaua -5'
24933 5' -52.6 NC_005284.1 + 39753 0.68 0.741007
Target:  5'- cGCU-UGUCGAGCACcuguugcgcgaaguuGCAAGCGAuCUGa -3'
miRNA:   3'- -CGGcACAGCUCGUG---------------CGUUCGUU-GAUa -5'
24933 5' -52.6 NC_005284.1 + 8323 0.67 0.747464
Target:  5'- cGUCuUGcCGAGCcgcaGCGCGAGCGACa-- -3'
miRNA:   3'- -CGGcACaGCUCG----UGCGUUCGUUGaua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.