miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24935 3' -55.4 NC_005284.1 + 24320 0.99 0.004811
Target:  5'- gAGACAAGaCCGCGUGUGGGGCAACGCu -3'
miRNA:   3'- -UCUGUUUcGGCGCACACCCCGUUGCG- -5'
24935 3' -55.4 NC_005284.1 + 45654 0.74 0.275006
Target:  5'- cAGGCGucgauAGCCGaGUGcGcGGGCGACGCg -3'
miRNA:   3'- -UCUGUu----UCGGCgCACaC-CCCGUUGCG- -5'
24935 3' -55.4 NC_005284.1 + 6814 0.71 0.387037
Target:  5'- cGGCGAGGCCGag---GGGGCGAuuCGCa -3'
miRNA:   3'- uCUGUUUCGGCgcacaCCCCGUU--GCG- -5'
24935 3' -55.4 NC_005284.1 + 40465 0.71 0.387037
Target:  5'- aGGGCAAGuucGaCCGCGUGUGGcGaaGACGCg -3'
miRNA:   3'- -UCUGUUU---C-GGCGCACACC-CcgUUGCG- -5'
24935 3' -55.4 NC_005284.1 + 15242 0.71 0.414649
Target:  5'- cGGCAcGGCCGCaagGUuGcGGCAGCGCa -3'
miRNA:   3'- uCUGUuUCGGCGca-CAcC-CCGUUGCG- -5'
24935 3' -55.4 NC_005284.1 + 18830 0.7 0.433716
Target:  5'- cGGCGAaggGGCCggGCGUGcaGGGGCAGCcgaGCa -3'
miRNA:   3'- uCUGUU---UCGG--CGCACa-CCCCGUUG---CG- -5'
24935 3' -55.4 NC_005284.1 + 15293 0.69 0.493792
Target:  5'- cGACGAGGaCCGCacgauGUGcGGGcGCAGCGg -3'
miRNA:   3'- uCUGUUUC-GGCG-----CACaCCC-CGUUGCg -5'
24935 3' -55.4 NC_005284.1 + 22243 0.69 0.50418
Target:  5'- cGuCGAGGUguuCGCGgGcGGGGCGGCGCu -3'
miRNA:   3'- uCuGUUUCG---GCGCaCaCCCCGUUGCG- -5'
24935 3' -55.4 NC_005284.1 + 9073 0.69 0.514661
Target:  5'- uGGACAAGcGuUCGCG-GcGGGGCAguuGCGCg -3'
miRNA:   3'- -UCUGUUU-C-GGCGCaCaCCCCGU---UGCG- -5'
24935 3' -55.4 NC_005284.1 + 13540 0.68 0.568245
Target:  5'- cGACGAgguAGUCGCaGUGUGcgacaaGGGgAACGCu -3'
miRNA:   3'- uCUGUU---UCGGCG-CACAC------CCCgUUGCG- -5'
24935 3' -55.4 NC_005284.1 + 54493 0.68 0.568245
Target:  5'- aGGAUAcGGaaCCGCGUG-GGacaagaucaGGCAGCGCa -3'
miRNA:   3'- -UCUGUuUC--GGCGCACaCC---------CCGUUGCG- -5'
24935 3' -55.4 NC_005284.1 + 24825 0.68 0.590096
Target:  5'- cGACcGGGUCGgGUGUaGcGGGCcgaaGACGCa -3'
miRNA:   3'- uCUGuUUCGGCgCACA-C-CCCG----UUGCG- -5'
24935 3' -55.4 NC_005284.1 + 7940 0.67 0.612089
Target:  5'- gGGACAucGCCGgGguaacgGaGGGCGACGa -3'
miRNA:   3'- -UCUGUuuCGGCgCaca---C-CCCGUUGCg -5'
24935 3' -55.4 NC_005284.1 + 10235 0.67 0.612089
Target:  5'- uGGGCAcGGUgGCGcuUGGGGCugcCGCg -3'
miRNA:   3'- -UCUGUuUCGgCGCacACCCCGuu-GCG- -5'
24935 3' -55.4 NC_005284.1 + 13994 0.67 0.634152
Target:  5'- uGGCGcGGCUGCGcgGUaagcGGGGCGugACGUa -3'
miRNA:   3'- uCUGUuUCGGCGCa-CA----CCCCGU--UGCG- -5'
24935 3' -55.4 NC_005284.1 + 21562 0.67 0.634152
Target:  5'- cGACGAgcaGGCCGCGc---GGGCGuucgACGCg -3'
miRNA:   3'- uCUGUU---UCGGCGCacacCCCGU----UGCG- -5'
24935 3' -55.4 NC_005284.1 + 20589 0.67 0.634152
Target:  5'- gAGAUAAGcGCCGUacggGUGagcGGcGGCAACGUa -3'
miRNA:   3'- -UCUGUUU-CGGCG----CACa--CC-CCGUUGCG- -5'
24935 3' -55.4 NC_005284.1 + 12201 0.67 0.645186
Target:  5'- cGGGCGGGGCgGUGUGgggaccGGGC-ACGUc -3'
miRNA:   3'- -UCUGUUUCGgCGCACac----CCCGuUGCG- -5'
24935 3' -55.4 NC_005284.1 + 50828 0.67 0.645186
Target:  5'- cGAU--GGCCGUuggGUGGGGCcgGGCGUu -3'
miRNA:   3'- uCUGuuUCGGCGca-CACCCCG--UUGCG- -5'
24935 3' -55.4 NC_005284.1 + 35803 0.67 0.656207
Target:  5'- cGGCGcuugAAGCCGUGcaUGGGGCcgacaaacAGCGCc -3'
miRNA:   3'- uCUGU----UUCGGCGCacACCCCG--------UUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.