miRNA display CGI


Results 21 - 32 of 32 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24935 5' -57.4 NC_005284.1 + 36643 0.68 0.486107
Target:  5'- aCGCucGGCg--GUgGCGGUuggGCCCCg -3'
miRNA:   3'- aGCGuuCCGaagCGgUGCCAa--CGGGG- -5'
24935 5' -57.4 NC_005284.1 + 41604 0.68 0.466116
Target:  5'- gCGCGAGGCcgCGCCGa-GUgcgaGCUCCg -3'
miRNA:   3'- aGCGUUCCGaaGCGGUgcCAa---CGGGG- -5'
24935 5' -57.4 NC_005284.1 + 26444 0.68 0.46217
Target:  5'- gUGCgAAGGCUgcgauucucaaaaCGCCGCGuUUGCCCa -3'
miRNA:   3'- aGCG-UUCCGAa------------GCGGUGCcAACGGGg -5'
24935 5' -57.4 NC_005284.1 + 34054 0.69 0.43125
Target:  5'- gUCGCu-GGCUUCGCgGCucggaaauacgccucGGccGCCCCc -3'
miRNA:   3'- -AGCGuuCCGAAGCGgUG---------------CCaaCGGGG- -5'
24935 5' -57.4 NC_005284.1 + 48757 0.69 0.408872
Target:  5'- cCGCGcGGCgugCGCCGCGaGUUGCgUUg -3'
miRNA:   3'- aGCGUuCCGaa-GCGGUGC-CAACGgGG- -5'
24935 5' -57.4 NC_005284.1 + 54571 0.7 0.390786
Target:  5'- -aGCAGGGCgcgugacugUCGCCacuGCGGUUGaCCa -3'
miRNA:   3'- agCGUUCCGa--------AGCGG---UGCCAACgGGg -5'
24935 5' -57.4 NC_005284.1 + 36843 0.7 0.381942
Target:  5'- aUCGCGAcuuGCUUUGCCGCGuccGCCUCg -3'
miRNA:   3'- -AGCGUUc--CGAAGCGGUGCcaaCGGGG- -5'
24935 5' -57.4 NC_005284.1 + 29932 0.7 0.364657
Target:  5'- aUCGCGAgaugcgucGGUUgacCGUCgACGGUUGCCCa -3'
miRNA:   3'- -AGCGUU--------CCGAa--GCGG-UGCCAACGGGg -5'
24935 5' -57.4 NC_005284.1 + 9753 0.7 0.364657
Target:  5'- aUCGCAAGGCUuucgcgcaUCGCU-CGcaUGCCCg -3'
miRNA:   3'- -AGCGUUCCGA--------AGCGGuGCcaACGGGg -5'
24935 5' -57.4 NC_005284.1 + 13837 0.71 0.323861
Target:  5'- aUGCAAG--UUCGCUugGGUguguaGCCCCg -3'
miRNA:   3'- aGCGUUCcgAAGCGGugCCAa----CGGGG- -5'
24935 5' -57.4 NC_005284.1 + 37703 0.71 0.316121
Target:  5'- -gGCGGGGCg-CGCaUACGGgccGCCCCg -3'
miRNA:   3'- agCGUUCCGaaGCG-GUGCCaa-CGGGG- -5'
24935 5' -57.4 NC_005284.1 + 24354 1.12 0.000392
Target:  5'- gUCGCAAGGCUUCGCCACGGUUGCCCCu -3'
miRNA:   3'- -AGCGUUCCGAAGCGGUGCCAACGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.