Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24935 | 5' | -57.4 | NC_005284.1 | + | 525 | 0.67 | 0.516825 |
Target: 5'- gCGCugccGGC-UCGCCG-GGUcgaGCCCCa -3' miRNA: 3'- aGCGuu--CCGaAGCGGUgCCAa--CGGGG- -5' |
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24935 | 5' | -57.4 | NC_005284.1 | + | 670 | 0.67 | 0.548293 |
Target: 5'- aCGCAGGGCgcUUGCCACGaacgacGUCUCg -3' miRNA: 3'- aGCGUUCCGa-AGCGGUGCcaa---CGGGG- -5' |
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24935 | 5' | -57.4 | NC_005284.1 | + | 1134 | 0.67 | 0.537731 |
Target: 5'- -gGCGAcGGCgcgUCGCCAUcg-UGCUCCa -3' miRNA: 3'- agCGUU-CCGa--AGCGGUGccaACGGGG- -5' |
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24935 | 5' | -57.4 | NC_005284.1 | + | 5684 | 0.66 | 0.569603 |
Target: 5'- uUCGCGAGGUUgaccCGCCGgauucgcacgUGGcaGCUCCg -3' miRNA: 3'- -AGCGUUCCGAa---GCGGU----------GCCaaCGGGG- -5' |
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24935 | 5' | -57.4 | NC_005284.1 | + | 6040 | 0.66 | 0.612753 |
Target: 5'- uUCGCGAGGacgUUGUCuCGGggGCgUCCg -3' miRNA: 3'- -AGCGUUCCga-AGCGGuGCCaaCG-GGG- -5' |
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24935 | 5' | -57.4 | NC_005284.1 | + | 8648 | 0.66 | 0.580336 |
Target: 5'- gCGCGAcGGCgggCGCacaGCGGaugcggcguUUGCCUCg -3' miRNA: 3'- aGCGUU-CCGaa-GCGg--UGCC---------AACGGGG- -5' |
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24935 | 5' | -57.4 | NC_005284.1 | + | 8988 | 0.66 | 0.580336 |
Target: 5'- -aGCucGGCUgUCGCgucgaGCGGUUGCCg- -3' miRNA: 3'- agCGuuCCGA-AGCGg----UGCCAACGGgg -5' |
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24935 | 5' | -57.4 | NC_005284.1 | + | 9753 | 0.7 | 0.364657 |
Target: 5'- aUCGCAAGGCUuucgcgcaUCGCU-CGcaUGCCCg -3' miRNA: 3'- -AGCGUUCCGA--------AGCGGuGCcaACGGGg -5' |
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24935 | 5' | -57.4 | NC_005284.1 | + | 9931 | 0.67 | 0.516825 |
Target: 5'- cUCGCGAGcGaugaUCGCCGCguaGGgcgUGCCCg -3' miRNA: 3'- -AGCGUUC-Cga--AGCGGUG---CCa--ACGGGg -5' |
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24935 | 5' | -57.4 | NC_005284.1 | + | 11164 | 0.66 | 0.569603 |
Target: 5'- aCGCA--GCUcgCGCCGCGGccGCCgCg -3' miRNA: 3'- aGCGUucCGAa-GCGGUGCCaaCGGgG- -5' |
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24935 | 5' | -57.4 | NC_005284.1 | + | 12333 | 0.67 | 0.55892 |
Target: 5'- aCGCAGggaggcgauccGGCUucgcgcgauUCGCCGCGGguggGCUCg -3' miRNA: 3'- aGCGUU-----------CCGA---------AGCGGUGCCaa--CGGGg -5' |
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24935 | 5' | -57.4 | NC_005284.1 | + | 13837 | 0.71 | 0.323861 |
Target: 5'- aUGCAAG--UUCGCUugGGUguguaGCCCCg -3' miRNA: 3'- aGCGUUCcgAAGCGGugCCAa----CGGGG- -5' |
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24935 | 5' | -57.4 | NC_005284.1 | + | 21891 | 0.67 | 0.548293 |
Target: 5'- gCGCcGGGCacgccgUCGCCAcCGGcUGCCg- -3' miRNA: 3'- aGCGuUCCGa-----AGCGGU-GCCaACGGgg -5' |
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24935 | 5' | -57.4 | NC_005284.1 | + | 24354 | 1.12 | 0.000392 |
Target: 5'- gUCGCAAGGCUUCGCCACGGUUGCCCCu -3' miRNA: 3'- -AGCGUUCCGAAGCGGUGCCAACGGGG- -5' |
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24935 | 5' | -57.4 | NC_005284.1 | + | 25756 | 0.67 | 0.505466 |
Target: 5'- aCGCAgAGGCUUgGCUcgcgcgaACGGcUGCgCCg -3' miRNA: 3'- aGCGU-UCCGAAgCGG-------UGCCaACGgGG- -5' |
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24935 | 5' | -57.4 | NC_005284.1 | + | 26444 | 0.68 | 0.46217 |
Target: 5'- gUGCgAAGGCUgcgauucucaaaaCGCCGCGuUUGCCCa -3' miRNA: 3'- aGCG-UUCCGAa------------GCGGUGCcAACGGGg -5' |
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24935 | 5' | -57.4 | NC_005284.1 | + | 29932 | 0.7 | 0.364657 |
Target: 5'- aUCGCGAgaugcgucGGUUgacCGUCgACGGUUGCCCa -3' miRNA: 3'- -AGCGUU--------CCGAa--GCGG-UGCCAACGGGg -5' |
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24935 | 5' | -57.4 | NC_005284.1 | + | 31116 | 0.66 | 0.569603 |
Target: 5'- cUGCGAGcaGCUUCgggauGUCGCGGUcgGCCUCu -3' miRNA: 3'- aGCGUUC--CGAAG-----CGGUGCCAa-CGGGG- -5' |
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24935 | 5' | -57.4 | NC_005284.1 | + | 31210 | 0.67 | 0.548293 |
Target: 5'- cUCGCGuaGCaUCGCCGCGacGUUGCCg- -3' miRNA: 3'- -AGCGUucCGaAGCGGUGC--CAACGGgg -5' |
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24935 | 5' | -57.4 | NC_005284.1 | + | 31427 | 0.67 | 0.55892 |
Target: 5'- uUCGC-GGGCgacgugCGCCgcuGCGGcgcgccggGCCCCc -3' miRNA: 3'- -AGCGuUCCGaa----GCGG---UGCCaa------CGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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