Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24935 | 5' | -57.4 | NC_005284.1 | + | 34054 | 0.69 | 0.43125 |
Target: 5'- gUCGCu-GGCUUCGCgGCucggaaauacgccucGGccGCCCCc -3' miRNA: 3'- -AGCGuuCCGAAGCGgUG---------------CCaaCGGGG- -5' |
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24935 | 5' | -57.4 | NC_005284.1 | + | 36643 | 0.68 | 0.486107 |
Target: 5'- aCGCucGGCg--GUgGCGGUuggGCCCCg -3' miRNA: 3'- aGCGuuCCGaagCGgUGCCAa--CGGGG- -5' |
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24935 | 5' | -57.4 | NC_005284.1 | + | 36843 | 0.7 | 0.381942 |
Target: 5'- aUCGCGAcuuGCUUUGCCGCGuccGCCUCg -3' miRNA: 3'- -AGCGUUc--CGAAGCGGUGCcaaCGGGG- -5' |
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24935 | 5' | -57.4 | NC_005284.1 | + | 37703 | 0.71 | 0.316121 |
Target: 5'- -gGCGGGGCg-CGCaUACGGgccGCCCCg -3' miRNA: 3'- agCGUUCCGaaGCG-GUGCCaa-CGGGG- -5' |
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24935 | 5' | -57.4 | NC_005284.1 | + | 39514 | 0.66 | 0.601919 |
Target: 5'- gUGCAuguGGUgcUCGCCGCGGccgaugUGCUUCa -3' miRNA: 3'- aGCGUu--CCGa-AGCGGUGCCa-----ACGGGG- -5' |
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24935 | 5' | -57.4 | NC_005284.1 | + | 41061 | 0.68 | 0.486107 |
Target: 5'- cUCGCGGGGC---GCCGCG--UGCCUCc -3' miRNA: 3'- -AGCGUUCCGaagCGGUGCcaACGGGG- -5' |
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24935 | 5' | -57.4 | NC_005284.1 | + | 41604 | 0.68 | 0.466116 |
Target: 5'- gCGCGAGGCcgCGCCGa-GUgcgaGCUCCg -3' miRNA: 3'- aGCGUUCCGaaGCGGUgcCAa---CGGGG- -5' |
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24935 | 5' | -57.4 | NC_005284.1 | + | 42980 | 0.67 | 0.537731 |
Target: 5'- uUCGCAGGGUgcgCGCCucuCGGcaucGUCCa -3' miRNA: 3'- -AGCGUUCCGaa-GCGGu--GCCaa--CGGGg -5' |
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24935 | 5' | -57.4 | NC_005284.1 | + | 45946 | 0.67 | 0.510617 |
Target: 5'- -aGCAGuGGCUUCGCgcuccacguagcaaACGGUucgaUGCCCg -3' miRNA: 3'- agCGUU-CCGAAGCGg-------------UGCCA----ACGGGg -5' |
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24935 | 5' | -57.4 | NC_005284.1 | + | 48757 | 0.69 | 0.408872 |
Target: 5'- cCGCGcGGCgugCGCCGCGaGUUGCgUUg -3' miRNA: 3'- aGCGUuCCGaa-GCGGUGC-CAACGgGG- -5' |
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24935 | 5' | -57.4 | NC_005284.1 | + | 50410 | 0.68 | 0.496253 |
Target: 5'- -aGCAcGGU-UCGCCGCGGcacGCCgCCa -3' miRNA: 3'- agCGUuCCGaAGCGGUGCCaa-CGG-GG- -5' |
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24935 | 5' | -57.4 | NC_005284.1 | + | 54571 | 0.7 | 0.390786 |
Target: 5'- -aGCAGGGCgcgugacugUCGCCacuGCGGUUGaCCa -3' miRNA: 3'- agCGUUCCGa--------AGCGG---UGCCAACgGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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