miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24935 5' -57.4 NC_005284.1 + 24354 1.12 0.000392
Target:  5'- gUCGCAAGGCUUCGCCACGGUUGCCCCu -3'
miRNA:   3'- -AGCGUUCCGAAGCGGUGCCAACGGGG- -5'
24935 5' -57.4 NC_005284.1 + 12333 0.67 0.55892
Target:  5'- aCGCAGggaggcgauccGGCUucgcgcgauUCGCCGCGGguggGCUCg -3'
miRNA:   3'- aGCGUU-----------CCGA---------AGCGGUGCCaa--CGGGg -5'
24935 5' -57.4 NC_005284.1 + 31427 0.67 0.55892
Target:  5'- uUCGC-GGGCgacgugCGCCgcuGCGGcgcgccggGCCCCc -3'
miRNA:   3'- -AGCGuUCCGaa----GCGG---UGCCaa------CGGGG- -5'
24935 5' -57.4 NC_005284.1 + 5684 0.66 0.569603
Target:  5'- uUCGCGAGGUUgaccCGCCGgauucgcacgUGGcaGCUCCg -3'
miRNA:   3'- -AGCGUUCCGAa---GCGGU----------GCCaaCGGGG- -5'
24935 5' -57.4 NC_005284.1 + 11164 0.66 0.569603
Target:  5'- aCGCA--GCUcgCGCCGCGGccGCCgCg -3'
miRNA:   3'- aGCGUucCGAa-GCGGUGCCaaCGGgG- -5'
24935 5' -57.4 NC_005284.1 + 31116 0.66 0.569603
Target:  5'- cUGCGAGcaGCUUCgggauGUCGCGGUcgGCCUCu -3'
miRNA:   3'- aGCGUUC--CGAAG-----CGGUGCCAa-CGGGG- -5'
24935 5' -57.4 NC_005284.1 + 8648 0.66 0.580336
Target:  5'- gCGCGAcGGCgggCGCacaGCGGaugcggcguUUGCCUCg -3'
miRNA:   3'- aGCGUU-CCGaa-GCGg--UGCC---------AACGGGG- -5'
24935 5' -57.4 NC_005284.1 + 39514 0.66 0.601919
Target:  5'- gUGCAuguGGUgcUCGCCGCGGccgaugUGCUUCa -3'
miRNA:   3'- aGCGUu--CCGa-AGCGGUGCCa-----ACGGGG- -5'
24935 5' -57.4 NC_005284.1 + 6040 0.66 0.612753
Target:  5'- uUCGCGAGGacgUUGUCuCGGggGCgUCCg -3'
miRNA:   3'- -AGCGUUCCga-AGCGGuGCCaaCG-GGG- -5'
24935 5' -57.4 NC_005284.1 + 31210 0.67 0.548293
Target:  5'- cUCGCGuaGCaUCGCCGCGacGUUGCCg- -3'
miRNA:   3'- -AGCGUucCGaAGCGGUGC--CAACGGgg -5'
24935 5' -57.4 NC_005284.1 + 1134 0.67 0.537731
Target:  5'- -gGCGAcGGCgcgUCGCCAUcg-UGCUCCa -3'
miRNA:   3'- agCGUU-CCGa--AGCGGUGccaACGGGG- -5'
24935 5' -57.4 NC_005284.1 + 37703 0.71 0.316121
Target:  5'- -gGCGGGGCg-CGCaUACGGgccGCCCCg -3'
miRNA:   3'- agCGUUCCGaaGCG-GUGCCaa-CGGGG- -5'
24935 5' -57.4 NC_005284.1 + 36843 0.7 0.381942
Target:  5'- aUCGCGAcuuGCUUUGCCGCGuccGCCUCg -3'
miRNA:   3'- -AGCGUUc--CGAAGCGGUGCcaaCGGGG- -5'
24935 5' -57.4 NC_005284.1 + 54571 0.7 0.390786
Target:  5'- -aGCAGGGCgcgugacugUCGCCacuGCGGUUGaCCa -3'
miRNA:   3'- agCGUUCCGa--------AGCGG---UGCCAACgGGg -5'
24935 5' -57.4 NC_005284.1 + 48757 0.69 0.408872
Target:  5'- cCGCGcGGCgugCGCCGCGaGUUGCgUUg -3'
miRNA:   3'- aGCGUuCCGaa-GCGGUGC-CAACGgGG- -5'
24935 5' -57.4 NC_005284.1 + 34054 0.69 0.43125
Target:  5'- gUCGCu-GGCUUCGCgGCucggaaauacgccucGGccGCCCCc -3'
miRNA:   3'- -AGCGuuCCGAAGCGgUG---------------CCaaCGGGG- -5'
24935 5' -57.4 NC_005284.1 + 26444 0.68 0.46217
Target:  5'- gUGCgAAGGCUgcgauucucaaaaCGCCGCGuUUGCCCa -3'
miRNA:   3'- aGCG-UUCCGAa------------GCGGUGCcAACGGGg -5'
24935 5' -57.4 NC_005284.1 + 41604 0.68 0.466116
Target:  5'- gCGCGAGGCcgCGCCGa-GUgcgaGCUCCg -3'
miRNA:   3'- aGCGUUCCGaaGCGGUgcCAa---CGGGG- -5'
24935 5' -57.4 NC_005284.1 + 41061 0.68 0.486107
Target:  5'- cUCGCGGGGC---GCCGCG--UGCCUCc -3'
miRNA:   3'- -AGCGUUCCGaagCGGUGCcaACGGGG- -5'
24935 5' -57.4 NC_005284.1 + 13837 0.71 0.323861
Target:  5'- aUGCAAG--UUCGCUugGGUguguaGCCCCg -3'
miRNA:   3'- aGCGUUCcgAAGCGGugCCAa----CGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.