miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24936 3' -52.9 NC_005284.1 + 9630 0.65 0.856491
Target:  5'- -----cGCAAGCGGCGGAggcuucagcgcaGGCCGa- -3'
miRNA:   3'- gcaaaaCGUUUGUCGCCUg-----------CCGGCcu -5'
24936 3' -52.9 NC_005284.1 + 49873 0.66 0.84964
Target:  5'- ---aUUGCuugaAGCGGAaGGCCGGc -3'
miRNA:   3'- gcaaAACGuuugUCGCCUgCCGGCCu -5'
24936 3' -52.9 NC_005284.1 + 7405 0.66 0.83819
Target:  5'- aCGg---GCAAACagauucaguggcagGGCGGGCaGUCGGAa -3'
miRNA:   3'- -GCaaaaCGUUUG--------------UCGCCUGcCGGCCU- -5'
24936 3' -52.9 NC_005284.1 + 14073 0.66 0.831866
Target:  5'- -----cGCGAACgAGUGGugGGauuucCCGGAa -3'
miRNA:   3'- gcaaaaCGUUUG-UCGCCugCC-----GGCCU- -5'
24936 3' -52.9 NC_005284.1 + 3227 0.66 0.813225
Target:  5'- gCGgaUUGaaCAGGCAGCGcGACggucccugcugaGGCCGGGa -3'
miRNA:   3'- -GCaaAAC--GUUUGUCGC-CUG------------CCGGCCU- -5'
24936 3' -52.9 NC_005284.1 + 10400 0.67 0.803605
Target:  5'- -----aGCAAgagGCGucGCGGGCGGCCGa- -3'
miRNA:   3'- gcaaaaCGUU---UGU--CGCCUGCCGGCcu -5'
24936 3' -52.9 NC_005284.1 + 34714 0.67 0.7938
Target:  5'- -----gGCAGAC-GUGGAgGGCCGcGAa -3'
miRNA:   3'- gcaaaaCGUUUGuCGCCUgCCGGC-CU- -5'
24936 3' -52.9 NC_005284.1 + 10187 0.68 0.699132
Target:  5'- cCGgcUUGCuGGCGGCGGucgGCGGCUuaccgGGAa -3'
miRNA:   3'- -GCaaAACGuUUGUCGCC---UGCCGG-----CCU- -5'
24936 3' -52.9 NC_005284.1 + 42620 0.69 0.688118
Target:  5'- -----aGCGAACAGCGGAUaaGCCGcGAc -3'
miRNA:   3'- gcaaaaCGUUUGUCGCCUGc-CGGC-CU- -5'
24936 3' -52.9 NC_005284.1 + 25658 0.69 0.643624
Target:  5'- aGUcg-GCAAccGCcgcGCGGACGGCgGGAu -3'
miRNA:   3'- gCAaaaCGUU--UGu--CGCCUGCCGgCCU- -5'
24936 3' -52.9 NC_005284.1 + 26547 0.69 0.643624
Target:  5'- cCGUUUuggGCGGGCAGUaGG-UGGCCGGc -3'
miRNA:   3'- -GCAAAa--CGUUUGUCG-CCuGCCGGCCu -5'
24936 3' -52.9 NC_005284.1 + 54726 0.72 0.522211
Target:  5'- cCGUcgUUGCccgccCGGCGGAUGcGCCGGGu -3'
miRNA:   3'- -GCAa-AACGuuu--GUCGCCUGC-CGGCCU- -5'
24936 3' -52.9 NC_005284.1 + 12692 0.73 0.429844
Target:  5'- -----aGCGGGCcGCGGACGGCCuGAa -3'
miRNA:   3'- gcaaaaCGUUUGuCGCCUGCCGGcCU- -5'
24936 3' -52.9 NC_005284.1 + 9246 0.78 0.231122
Target:  5'- -----cGCGcGCGGCGGGCGGCaCGGAu -3'
miRNA:   3'- gcaaaaCGUuUGUCGCCUGCCG-GCCU- -5'
24936 3' -52.9 NC_005284.1 + 24527 1.1 0.001592
Target:  5'- aCGUUUUGCAAACAGCGGACGGCCGGAc -3'
miRNA:   3'- -GCAAAACGUUUGUCGCCUGCCGGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.