miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24936 5' -58.9 NC_005284.1 + 40302 0.66 0.560398
Target:  5'- cGGCUAcACCGuagaGCCGAcCGGUUGCu- -3'
miRNA:   3'- -CCGGUcUGGCug--CGGCU-GCCGAUGug -5'
24936 5' -58.9 NC_005284.1 + 3213 0.66 0.560398
Target:  5'- cGGCCuuGGuuGACGCgGAUugaacaGGCaGCGCg -3'
miRNA:   3'- -CCGGu-CUggCUGCGgCUG------CCGaUGUG- -5'
24936 5' -58.9 NC_005284.1 + 18122 0.66 0.560398
Target:  5'- -aCCGGAUCGGCGUCGAagcgcuCGGCga-GCg -3'
miRNA:   3'- ccGGUCUGGCUGCGGCU------GCCGaugUG- -5'
24936 5' -58.9 NC_005284.1 + 20033 0.66 0.559349
Target:  5'- aGCCAGcCCGGCaCCGGCGuucgauuGCUGCu- -3'
miRNA:   3'- cCGGUCuGGCUGcGGCUGC-------CGAUGug -5'
24936 5' -58.9 NC_005284.1 + 15178 0.66 0.557252
Target:  5'- cGGCCGugccGACCGaccaguucgcgcucGCGUCGGaGGaCUACGCa -3'
miRNA:   3'- -CCGGU----CUGGC--------------UGCGGCUgCC-GAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 46867 0.66 0.549932
Target:  5'- cGCCAaccGACCGgaccuuGCGCCGGCgauugaacccGGCUuCGCa -3'
miRNA:   3'- cCGGU---CUGGC------UGCGGCUG----------CCGAuGUG- -5'
24936 5' -58.9 NC_005284.1 + 10354 0.66 0.543681
Target:  5'- cGGCa--ACUGACGCCGcuGuuacaggaaucugagCGGCUGCGCa -3'
miRNA:   3'- -CCGgucUGGCUGCGGC--U---------------GCCGAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 38338 0.66 0.539526
Target:  5'- uGCCGGGC--GCGCUGGCGGCaccaggACAa -3'
miRNA:   3'- cCGGUCUGgcUGCGGCUGCCGa-----UGUg -5'
24936 5' -58.9 NC_005284.1 + 53775 0.66 0.539526
Target:  5'- cGGUUu-GCUGAUGCCGGCuGCUGCGg -3'
miRNA:   3'- -CCGGucUGGCUGCGGCUGcCGAUGUg -5'
24936 5' -58.9 NC_005284.1 + 37289 0.66 0.539526
Target:  5'- cGGUCAacACCGACaUCGGCGucaGCUACGCg -3'
miRNA:   3'- -CCGGUc-UGGCUGcGGCUGC---CGAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 5160 0.66 0.539526
Target:  5'- uGCCAGACgGAucuUGUCGAuCGGCgucGCAUu -3'
miRNA:   3'- cCGGUCUGgCU---GCGGCU-GCCGa--UGUG- -5'
24936 5' -58.9 NC_005284.1 + 10011 0.66 0.539526
Target:  5'- cGCCucaAGcGCCGuACGCCG-CuGCUGCGCg -3'
miRNA:   3'- cCGG---UC-UGGC-UGCGGCuGcCGAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 33954 0.66 0.529189
Target:  5'- cGCCGcccgcucgucGGCCGGCGCUGcuGCGgGCUGCuCg -3'
miRNA:   3'- cCGGU----------CUGGCUGCGGC--UGC-CGAUGuG- -5'
24936 5' -58.9 NC_005284.1 + 12754 0.66 0.529189
Target:  5'- cGGCCcGcuggguguaGCCGuCGCCGAacugGGCUuuGCGCa -3'
miRNA:   3'- -CCGGuC---------UGGCuGCGGCUg---CCGA--UGUG- -5'
24936 5' -58.9 NC_005284.1 + 36852 0.66 0.529189
Target:  5'- uGCUuuGCCG-CGuCCGccuCGGCUGCACg -3'
miRNA:   3'- cCGGucUGGCuGC-GGCu--GCCGAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 15047 0.66 0.529189
Target:  5'- cGCaCAGGaaGcCGCCGaACGGCaGCGCg -3'
miRNA:   3'- cCG-GUCUggCuGCGGC-UGCCGaUGUG- -5'
24936 5' -58.9 NC_005284.1 + 25658 0.66 0.529189
Target:  5'- aGUCGGcaACCGccGCGCgGACGGCgggaucgaaUGCACg -3'
miRNA:   3'- cCGGUC--UGGC--UGCGgCUGCCG---------AUGUG- -5'
24936 5' -58.9 NC_005284.1 + 12653 0.66 0.52713
Target:  5'- uGCguGugCGcaaagcccaguuCGgCGACGGCUACACc -3'
miRNA:   3'- cCGguCugGCu-----------GCgGCUGCCGAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 42885 0.66 0.518925
Target:  5'- gGGCCucucGAUggaCGAUGCCGAgaGGCgGCACc -3'
miRNA:   3'- -CCGGu---CUG---GCUGCGGCUg-CCGaUGUG- -5'
24936 5' -58.9 NC_005284.1 + 7724 0.66 0.518925
Target:  5'- aGCuCGuGCCGcCGCCGGCGGCguaACu -3'
miRNA:   3'- cCG-GUcUGGCuGCGGCUGCCGaugUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.