Results 41 - 60 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24936 | 5' | -58.9 | NC_005284.1 | + | 21746 | 0.67 | 0.468906 |
Target: 5'- aGCCugcGGGCUGcucuUGCCGcuggcacugaGCGGCUGCGCg -3' miRNA: 3'- cCGG---UCUGGCu---GCGGC----------UGCCGAUGUG- -5' |
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24936 | 5' | -58.9 | NC_005284.1 | + | 8191 | 0.68 | 0.440106 |
Target: 5'- uGCacgGGGCCGaACGCCGccgcgaccGCGGUUGCAUc -3' miRNA: 3'- cCGg--UCUGGC-UGCGGC--------UGCCGAUGUG- -5' |
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24936 | 5' | -58.9 | NC_005284.1 | + | 7736 | 0.68 | 0.421474 |
Target: 5'- aGCCcauuGACCGACGCCGcccACGuGUacugACGCa -3' miRNA: 3'- cCGGu---CUGGCUGCGGC---UGC-CGa---UGUG- -5' |
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24936 | 5' | -58.9 | NC_005284.1 | + | 18030 | 0.68 | 0.421474 |
Target: 5'- cGCCGuGAagCGAuCGCCGGCGGCgauugucgGCGCc -3' miRNA: 3'- cCGGU-CUg-GCU-GCGGCUGCCGa-------UGUG- -5' |
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24936 | 5' | -58.9 | NC_005284.1 | + | 25750 | 0.68 | 0.430731 |
Target: 5'- aGGCUuGGCUcGCGCgaACGGCUGCGCc -3' miRNA: 3'- -CCGGuCUGGcUGCGgcUGCCGAUGUG- -5' |
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24936 | 5' | -58.9 | NC_005284.1 | + | 41605 | 0.68 | 0.440106 |
Target: 5'- cGCgAGGCCG-CGCCGaguGCGaGCUccgACACg -3' miRNA: 3'- cCGgUCUGGCuGCGGC---UGC-CGA---UGUG- -5' |
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24936 | 5' | -58.9 | NC_005284.1 | + | 44239 | 0.68 | 0.402432 |
Target: 5'- gGGCCgguaguggaacugGGAUUGGuCGCUGAUGGCgGCACc -3' miRNA: 3'- -CCGG-------------UCUGGCU-GCGGCUGCCGaUGUG- -5' |
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24936 | 5' | -58.9 | NC_005284.1 | + | 21279 | 0.68 | 0.412339 |
Target: 5'- -aUCGGGCCGcGCGCCuacuGCGGCaGCACa -3' miRNA: 3'- ccGGUCUGGC-UGCGGc---UGCCGaUGUG- -5' |
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24936 | 5' | -58.9 | NC_005284.1 | + | 40228 | 0.68 | 0.412339 |
Target: 5'- cGGCCAGACC-ACGuCCGcauCGGCaGgACc -3' miRNA: 3'- -CCGGUCUGGcUGC-GGCu--GCCGaUgUG- -5' |
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24936 | 5' | -58.9 | NC_005284.1 | + | 14524 | 0.68 | 0.440106 |
Target: 5'- aGCCAucGCCGACGCUG-CGGgUGgGCg -3' miRNA: 3'- cCGGUc-UGGCUGCGGCuGCCgAUgUG- -5' |
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24936 | 5' | -58.9 | NC_005284.1 | + | 34030 | 0.68 | 0.430731 |
Target: 5'- cGCCGG-CCGACgaGCgGGCGGCgcuucCGCa -3' miRNA: 3'- cCGGUCuGGCUG--CGgCUGCCGau---GUG- -5' |
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24936 | 5' | -58.9 | NC_005284.1 | + | 5780 | 0.69 | 0.377052 |
Target: 5'- uGGCC-GACCaaACGCCGAUcguuucgcucgaGGUUGCGCu -3' miRNA: 3'- -CCGGuCUGGc-UGCGGCUG------------CCGAUGUG- -5' |
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24936 | 5' | -58.9 | NC_005284.1 | + | 29855 | 0.69 | 0.385681 |
Target: 5'- cGGUCAaGCCGACGCaucucgCGAUGGUcgGCGCc -3' miRNA: 3'- -CCGGUcUGGCUGCG------GCUGCCGa-UGUG- -5' |
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24936 | 5' | -58.9 | NC_005284.1 | + | 47733 | 0.69 | 0.385681 |
Target: 5'- aGGCCGuGCuCGGCGguaCGGCGGC-GCGCg -3' miRNA: 3'- -CCGGUcUG-GCUGCg--GCUGCCGaUGUG- -5' |
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24936 | 5' | -58.9 | NC_005284.1 | + | 30678 | 0.69 | 0.385681 |
Target: 5'- aGCCGG-CCGGCggcuuucuuGCCGACGcGCUcuGCAUa -3' miRNA: 3'- cCGGUCuGGCUG---------CGGCUGC-CGA--UGUG- -5' |
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24936 | 5' | -58.9 | NC_005284.1 | + | 17863 | 0.69 | 0.377052 |
Target: 5'- uGCCgacccaaagaAGGCCGGcCGCCGGauCGGCggGCGCa -3' miRNA: 3'- cCGG----------UCUGGCU-GCGGCU--GCCGa-UGUG- -5' |
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24936 | 5' | -58.9 | NC_005284.1 | + | 31309 | 0.69 | 0.371937 |
Target: 5'- cGCCGGAUCGAcaguguugucgaaaaCGUCGGCGaGCgACGCg -3' miRNA: 3'- cCGGUCUGGCU---------------GCGGCUGC-CGaUGUG- -5' |
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24936 | 5' | -58.9 | NC_005284.1 | + | 7066 | 0.69 | 0.360188 |
Target: 5'- cGCCGacguucACCGACGCCGAuCGGCuUGC-Cg -3' miRNA: 3'- cCGGUc-----UGGCUGCGGCU-GCCG-AUGuG- -5' |
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24936 | 5' | -58.9 | NC_005284.1 | + | 52930 | 0.69 | 0.359358 |
Target: 5'- cGGCaGGgcGCCGAaGCCGAUGGCUuuccucgACGCa -3' miRNA: 3'- -CCGgUC--UGGCUgCGGCUGCCGA-------UGUG- -5' |
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24936 | 5' | -58.9 | NC_005284.1 | + | 15748 | 0.69 | 0.343857 |
Target: 5'- gGGgCGGAauGugGgCCGACaGCUGCACg -3' miRNA: 3'- -CCgGUCUggCugC-GGCUGcCGAUGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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