miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24936 5' -58.9 NC_005284.1 + 24561 1.12 0.000296
Target:  5'- cGGCCAGACCGACGCCGACGGCUACACg -3'
miRNA:   3'- -CCGGUCUGGCUGCGGCUGCCGAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 48238 0.77 0.106005
Target:  5'- uGGCgcaaAGACUGACGCUGACGGCgcguugccgugcggGCACu -3'
miRNA:   3'- -CCGg---UCUGGCUGCGGCUGCCGa-------------UGUG- -5'
24936 5' -58.9 NC_005284.1 + 30743 0.77 0.110758
Target:  5'- cGCCGG-CCGGCuGCuCGACGGCcGCACg -3'
miRNA:   3'- cCGGUCuGGCUG-CG-GCUGCCGaUGUG- -5'
24936 5' -58.9 NC_005284.1 + 18347 0.76 0.120212
Target:  5'- aGG-CGGACguuCGACGgCGGCGGCUGCACc -3'
miRNA:   3'- -CCgGUCUG---GCUGCgGCUGCCGAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 18897 0.75 0.161624
Target:  5'- cGGCCAGAUCGGgaaGUCGGCGcuuggcacggaGCUGCGCg -3'
miRNA:   3'- -CCGGUCUGGCUg--CGGCUGC-----------CGAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 21746 0.75 0.161624
Target:  5'- cGGCCAccGCCGACG-CGGCGGCaucgUGCGCg -3'
miRNA:   3'- -CCGGUc-UGGCUGCgGCUGCCG----AUGUG- -5'
24936 5' -58.9 NC_005284.1 + 31059 0.73 0.199409
Target:  5'- cGCCAGuucgaacuacGCCGACcaGCCGACGGCggccUACAUu -3'
miRNA:   3'- cCGGUC----------UGGCUG--CGGCUGCCG----AUGUG- -5'
24936 5' -58.9 NC_005284.1 + 33375 0.72 0.226762
Target:  5'- cGUCGG-CCGGCgcuGCCGACGGCU-CGCc -3'
miRNA:   3'- cCGGUCuGGCUG---CGGCUGCCGAuGUG- -5'
24936 5' -58.9 NC_005284.1 + 14391 0.71 0.257228
Target:  5'- uGCaCGGAaaUCGGCGCCGACauGCUGCGCu -3'
miRNA:   3'- cCG-GUCU--GGCUGCGGCUGc-CGAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 65 0.71 0.259805
Target:  5'- uGCCGGGCCGGggcagaaaacccaaGCCGACGGC-ACGg -3'
miRNA:   3'- cCGGUCUGGCUg-------------CGGCUGCCGaUGUg -5'
24936 5' -58.9 NC_005284.1 + 32865 0.71 0.270323
Target:  5'- cGCgCAGGCCGACGCac-CGGCagagGCGCg -3'
miRNA:   3'- cCG-GUCUGGCUGCGgcuGCCGa---UGUG- -5'
24936 5' -58.9 NC_005284.1 + 50299 0.71 0.277069
Target:  5'- cGGCC-GACCGuCGCCGAgGGUucgaaguauUugGCg -3'
miRNA:   3'- -CCGGuCUGGCuGCGGCUgCCG---------AugUG- -5'
24936 5' -58.9 NC_005284.1 + 16672 0.71 0.290963
Target:  5'- cGGCCgucgagcgugAGGCCGGCGUCGGCGuGCcGCu- -3'
miRNA:   3'- -CCGG----------UCUGGCUGCGGCUGC-CGaUGug -5'
24936 5' -58.9 NC_005284.1 + 11576 0.71 0.290963
Target:  5'- uGCgCAGAUCGACGCgGAgcuCGGCgacUACGCg -3'
miRNA:   3'- cCG-GUCUGGCUGCGgCU---GCCG---AUGUG- -5'
24936 5' -58.9 NC_005284.1 + 14718 0.7 0.305397
Target:  5'- cGGCCGGAaaauucaCGGCGUCGA-GGUaGCGCg -3'
miRNA:   3'- -CCGGUCUg------GCUGCGGCUgCCGaUGUG- -5'
24936 5' -58.9 NC_005284.1 + 32788 0.7 0.312817
Target:  5'- cGGCCGGACUG-CG-CGACGGaaaaGCGCu -3'
miRNA:   3'- -CCGGUCUGGCuGCgGCUGCCga--UGUG- -5'
24936 5' -58.9 NC_005284.1 + 3473 0.7 0.328065
Target:  5'- cGGUgAGcACaCGACGgCuACGGCUGCGCa -3'
miRNA:   3'- -CCGgUC-UG-GCUGCgGcUGCCGAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 15748 0.69 0.343857
Target:  5'- gGGgCGGAauGugGgCCGACaGCUGCACg -3'
miRNA:   3'- -CCgGUCUggCugC-GGCUGcCGAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 52930 0.69 0.359358
Target:  5'- cGGCaGGgcGCCGAaGCCGAUGGCUuuccucgACGCa -3'
miRNA:   3'- -CCGgUC--UGGCUgCGGCUGCCGA-------UGUG- -5'
24936 5' -58.9 NC_005284.1 + 7066 0.69 0.360188
Target:  5'- cGCCGacguucACCGACGCCGAuCGGCuUGC-Cg -3'
miRNA:   3'- cCGGUc-----UGGCUGCGGCU-GCCG-AUGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.