miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24936 5' -58.9 NC_005284.1 + 34366 0.67 0.449595
Target:  5'- cGCUgacGGACgagcacaucgCGACGCUGAaacUGGCUGCGCg -3'
miRNA:   3'- cCGG---UCUG----------GCUGCGGCU---GCCGAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 45692 0.67 0.449595
Target:  5'- cGCCuucacGACCGcGCGUCGAcaCGGCUGUACa -3'
miRNA:   3'- cCGGu----CUGGC-UGCGGCU--GCCGAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 47676 0.67 0.449595
Target:  5'- aGGCguuGAUCGAUGCCGcugACGGCaaggaaggGCACg -3'
miRNA:   3'- -CCGgu-CUGGCUGCGGC---UGCCGa-------UGUG- -5'
24936 5' -58.9 NC_005284.1 + 10946 0.67 0.459197
Target:  5'- uGGCCGGcCuCGuCGCCGgACGaGCggACGCa -3'
miRNA:   3'- -CCGGUCuG-GCuGCGGC-UGC-CGa-UGUG- -5'
24936 5' -58.9 NC_005284.1 + 21746 0.67 0.468906
Target:  5'- aGCCugcGGGCUGcucuUGCCGcuggcacugaGCGGCUGCGCg -3'
miRNA:   3'- cCGG---UCUGGCu---GCGGC----------UGCCGAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 46466 0.67 0.47872
Target:  5'- cGCCgAGcguCCGACGCUGGCGuuaGCUGCuCg -3'
miRNA:   3'- cCGG-UCu--GGCUGCGGCUGC---CGAUGuG- -5'
24936 5' -58.9 NC_005284.1 + 21935 0.67 0.47872
Target:  5'- cGCgAGAUCGACaaaCUGACGGcCUACAg -3'
miRNA:   3'- cCGgUCUGGCUGc--GGCUGCC-GAUGUg -5'
24936 5' -58.9 NC_005284.1 + 21923 0.67 0.482673
Target:  5'- cGGCaccaucGCCcACGCCGGCGGCgcuggaagcgccggGCACg -3'
miRNA:   3'- -CCGguc---UGGcUGCGGCUGCCGa-------------UGUG- -5'
24936 5' -58.9 NC_005284.1 + 46541 0.67 0.488633
Target:  5'- cGCCAGcguCgGACGCuCGGCGGCauucgGCGa -3'
miRNA:   3'- cCGGUCu--GgCUGCG-GCUGCCGa----UGUg -5'
24936 5' -58.9 NC_005284.1 + 30921 0.67 0.488633
Target:  5'- -aUCGGGCgGGCGCCGugGcGCUuuCGCc -3'
miRNA:   3'- ccGGUCUGgCUGCGGCugC-CGAu-GUG- -5'
24936 5' -58.9 NC_005284.1 + 31518 0.67 0.488633
Target:  5'- gGGCCcGGC--GCGCCGcaGCGGC-GCACg -3'
miRNA:   3'- -CCGGuCUGgcUGCGGC--UGCCGaUGUG- -5'
24936 5' -58.9 NC_005284.1 + 5942 0.67 0.498642
Target:  5'- aGGCggCAGuuGCgGACGCC-ACGGCUgGCGCc -3'
miRNA:   3'- -CCG--GUC--UGgCUGCGGcUGCCGA-UGUG- -5'
24936 5' -58.9 NC_005284.1 + 8851 0.67 0.498642
Target:  5'- -aCCAGAUCGAuuuCGCgauugcgcagaaCGACGuGCUGCGCa -3'
miRNA:   3'- ccGGUCUGGCU---GCG------------GCUGC-CGAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 47600 0.66 0.508741
Target:  5'- cGGUCGGcACCucGACGCCGAacacgaCGGCgauaGCAUc -3'
miRNA:   3'- -CCGGUC-UGG--CUGCGGCU------GCCGa---UGUG- -5'
24936 5' -58.9 NC_005284.1 + 4740 0.66 0.508741
Target:  5'- uGCCGGGCCaGACGUCGuCGaGUaGCAUc -3'
miRNA:   3'- cCGGUCUGG-CUGCGGCuGC-CGaUGUG- -5'
24936 5' -58.9 NC_005284.1 + 3723 0.66 0.508741
Target:  5'- cGGCCGGG-CGuuGCCGGuucugUGGCaGCACg -3'
miRNA:   3'- -CCGGUCUgGCugCGGCU-----GCCGaUGUG- -5'
24936 5' -58.9 NC_005284.1 + 8065 0.66 0.518925
Target:  5'- cGCCGGAUgGuuGgCGGCGGCUAUu- -3'
miRNA:   3'- cCGGUCUGgCugCgGCUGCCGAUGug -5'
24936 5' -58.9 NC_005284.1 + 46289 0.66 0.518925
Target:  5'- cGGCCAGuucuCCcACGaCuCGGgaGGCUGCGCg -3'
miRNA:   3'- -CCGGUCu---GGcUGC-G-GCUg-CCGAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 9776 0.66 0.518925
Target:  5'- aGCCAG-CCGucaAUGCCGACugcaucgcaaGGCUuucGCGCa -3'
miRNA:   3'- cCGGUCuGGC---UGCGGCUG----------CCGA---UGUG- -5'
24936 5' -58.9 NC_005284.1 + 46011 0.66 0.518925
Target:  5'- aGGUCAGACCagauaGGCGCCuGAucaaUGGCUucCGCu -3'
miRNA:   3'- -CCGGUCUGG-----CUGCGG-CU----GCCGAu-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.