Results 1 - 20 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24936 | 5' | -58.9 | NC_005284.1 | + | 65 | 0.71 | 0.259805 |
Target: 5'- uGCCGGGCCGGggcagaaaacccaaGCCGACGGC-ACGg -3' miRNA: 3'- cCGGUCUGGCUg-------------CGGCUGCCGaUGUg -5' |
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24936 | 5' | -58.9 | NC_005284.1 | + | 535 | 0.69 | 0.385681 |
Target: 5'- cGCC-GACCaGGCGCUGcCGGCU-CGCc -3' miRNA: 3'- cCGGuCUGG-CUGCGGCuGCCGAuGUG- -5' |
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24936 | 5' | -58.9 | NC_005284.1 | + | 3213 | 0.66 | 0.560398 |
Target: 5'- cGGCCuuGGuuGACGCgGAUugaacaGGCaGCGCg -3' miRNA: 3'- -CCGGu-CUggCUGCGgCUG------CCGaUGUG- -5' |
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24936 | 5' | -58.9 | NC_005284.1 | + | 3473 | 0.7 | 0.328065 |
Target: 5'- cGGUgAGcACaCGACGgCuACGGCUGCGCa -3' miRNA: 3'- -CCGgUC-UG-GCUGCgGcUGCCGAUGUG- -5' |
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24936 | 5' | -58.9 | NC_005284.1 | + | 3723 | 0.66 | 0.508741 |
Target: 5'- cGGCCGGG-CGuuGCCGGuucugUGGCaGCACg -3' miRNA: 3'- -CCGGUCUgGCugCGGCU-----GCCGaUGUG- -5' |
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24936 | 5' | -58.9 | NC_005284.1 | + | 4740 | 0.66 | 0.508741 |
Target: 5'- uGCCGGGCCaGACGUCGuCGaGUaGCAUc -3' miRNA: 3'- cCGGUCUGG-CUGCGGCuGC-CGaUGUG- -5' |
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24936 | 5' | -58.9 | NC_005284.1 | + | 5160 | 0.66 | 0.539526 |
Target: 5'- uGCCAGACgGAucuUGUCGAuCGGCgucGCAUu -3' miRNA: 3'- cCGGUCUGgCU---GCGGCU-GCCGa--UGUG- -5' |
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24936 | 5' | -58.9 | NC_005284.1 | + | 5780 | 0.69 | 0.377052 |
Target: 5'- uGGCC-GACCaaACGCCGAUcguuucgcucgaGGUUGCGCu -3' miRNA: 3'- -CCGGuCUGGc-UGCGGCUG------------CCGAUGUG- -5' |
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24936 | 5' | -58.9 | NC_005284.1 | + | 5942 | 0.67 | 0.498642 |
Target: 5'- aGGCggCAGuuGCgGACGCC-ACGGCUgGCGCc -3' miRNA: 3'- -CCG--GUC--UGgCUGCGGcUGCCGA-UGUG- -5' |
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24936 | 5' | -58.9 | NC_005284.1 | + | 7066 | 0.69 | 0.360188 |
Target: 5'- cGCCGacguucACCGACGCCGAuCGGCuUGC-Cg -3' miRNA: 3'- cCGGUc-----UGGCUGCGGCU-GCCG-AUGuG- -5' |
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24936 | 5' | -58.9 | NC_005284.1 | + | 7440 | 0.69 | 0.368554 |
Target: 5'- cGCCAGAUCGgccGCGUCGAgauCGGUcgACGCa -3' miRNA: 3'- cCGGUCUGGC---UGCGGCU---GCCGa-UGUG- -5' |
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24936 | 5' | -58.9 | NC_005284.1 | + | 7724 | 0.66 | 0.518925 |
Target: 5'- aGCuCGuGCCGcCGCCGGCGGCguaACu -3' miRNA: 3'- cCG-GUcUGGCuGCGGCUGCCGaugUG- -5' |
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24936 | 5' | -58.9 | NC_005284.1 | + | 7736 | 0.68 | 0.421474 |
Target: 5'- aGCCcauuGACCGACGCCGcccACGuGUacugACGCa -3' miRNA: 3'- cCGGu---CUGGCUGCGGC---UGC-CGa---UGUG- -5' |
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24936 | 5' | -58.9 | NC_005284.1 | + | 8065 | 0.66 | 0.518925 |
Target: 5'- cGCCGGAUgGuuGgCGGCGGCUAUu- -3' miRNA: 3'- cCGGUCUGgCugCgGCUGCCGAUGug -5' |
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24936 | 5' | -58.9 | NC_005284.1 | + | 8191 | 0.68 | 0.440106 |
Target: 5'- uGCacgGGGCCGaACGCCGccgcgaccGCGGUUGCAUc -3' miRNA: 3'- cCGg--UCUGGC-UGCGGC--------UGCCGAUGUG- -5' |
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24936 | 5' | -58.9 | NC_005284.1 | + | 8851 | 0.67 | 0.498642 |
Target: 5'- -aCCAGAUCGAuuuCGCgauugcgcagaaCGACGuGCUGCGCa -3' miRNA: 3'- ccGGUCUGGCU---GCG------------GCUGC-CGAUGUG- -5' |
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24936 | 5' | -58.9 | NC_005284.1 | + | 9776 | 0.66 | 0.518925 |
Target: 5'- aGCCAG-CCGucaAUGCCGACugcaucgcaaGGCUuucGCGCa -3' miRNA: 3'- cCGGUCuGGC---UGCGGCUG----------CCGA---UGUG- -5' |
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24936 | 5' | -58.9 | NC_005284.1 | + | 10011 | 0.66 | 0.539526 |
Target: 5'- cGCCucaAGcGCCGuACGCCG-CuGCUGCGCg -3' miRNA: 3'- cCGG---UC-UGGC-UGCGGCuGcCGAUGUG- -5' |
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24936 | 5' | -58.9 | NC_005284.1 | + | 10354 | 0.66 | 0.543681 |
Target: 5'- cGGCa--ACUGACGCCGcuGuuacaggaaucugagCGGCUGCGCa -3' miRNA: 3'- -CCGgucUGGCUGCGGC--U---------------GCCGAUGUG- -5' |
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24936 | 5' | -58.9 | NC_005284.1 | + | 10946 | 0.67 | 0.459197 |
Target: 5'- uGGCCGGcCuCGuCGCCGgACGaGCggACGCa -3' miRNA: 3'- -CCGGUCuG-GCuGCGGC-UGC-CGa-UGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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