miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24936 5' -58.9 NC_005284.1 + 65 0.71 0.259805
Target:  5'- uGCCGGGCCGGggcagaaaacccaaGCCGACGGC-ACGg -3'
miRNA:   3'- cCGGUCUGGCUg-------------CGGCUGCCGaUGUg -5'
24936 5' -58.9 NC_005284.1 + 535 0.69 0.385681
Target:  5'- cGCC-GACCaGGCGCUGcCGGCU-CGCc -3'
miRNA:   3'- cCGGuCUGG-CUGCGGCuGCCGAuGUG- -5'
24936 5' -58.9 NC_005284.1 + 3213 0.66 0.560398
Target:  5'- cGGCCuuGGuuGACGCgGAUugaacaGGCaGCGCg -3'
miRNA:   3'- -CCGGu-CUggCUGCGgCUG------CCGaUGUG- -5'
24936 5' -58.9 NC_005284.1 + 3473 0.7 0.328065
Target:  5'- cGGUgAGcACaCGACGgCuACGGCUGCGCa -3'
miRNA:   3'- -CCGgUC-UG-GCUGCgGcUGCCGAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 3723 0.66 0.508741
Target:  5'- cGGCCGGG-CGuuGCCGGuucugUGGCaGCACg -3'
miRNA:   3'- -CCGGUCUgGCugCGGCU-----GCCGaUGUG- -5'
24936 5' -58.9 NC_005284.1 + 4740 0.66 0.508741
Target:  5'- uGCCGGGCCaGACGUCGuCGaGUaGCAUc -3'
miRNA:   3'- cCGGUCUGG-CUGCGGCuGC-CGaUGUG- -5'
24936 5' -58.9 NC_005284.1 + 5160 0.66 0.539526
Target:  5'- uGCCAGACgGAucuUGUCGAuCGGCgucGCAUu -3'
miRNA:   3'- cCGGUCUGgCU---GCGGCU-GCCGa--UGUG- -5'
24936 5' -58.9 NC_005284.1 + 5780 0.69 0.377052
Target:  5'- uGGCC-GACCaaACGCCGAUcguuucgcucgaGGUUGCGCu -3'
miRNA:   3'- -CCGGuCUGGc-UGCGGCUG------------CCGAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 5942 0.67 0.498642
Target:  5'- aGGCggCAGuuGCgGACGCC-ACGGCUgGCGCc -3'
miRNA:   3'- -CCG--GUC--UGgCUGCGGcUGCCGA-UGUG- -5'
24936 5' -58.9 NC_005284.1 + 7066 0.69 0.360188
Target:  5'- cGCCGacguucACCGACGCCGAuCGGCuUGC-Cg -3'
miRNA:   3'- cCGGUc-----UGGCUGCGGCU-GCCG-AUGuG- -5'
24936 5' -58.9 NC_005284.1 + 7440 0.69 0.368554
Target:  5'- cGCCAGAUCGgccGCGUCGAgauCGGUcgACGCa -3'
miRNA:   3'- cCGGUCUGGC---UGCGGCU---GCCGa-UGUG- -5'
24936 5' -58.9 NC_005284.1 + 7724 0.66 0.518925
Target:  5'- aGCuCGuGCCGcCGCCGGCGGCguaACu -3'
miRNA:   3'- cCG-GUcUGGCuGCGGCUGCCGaugUG- -5'
24936 5' -58.9 NC_005284.1 + 7736 0.68 0.421474
Target:  5'- aGCCcauuGACCGACGCCGcccACGuGUacugACGCa -3'
miRNA:   3'- cCGGu---CUGGCUGCGGC---UGC-CGa---UGUG- -5'
24936 5' -58.9 NC_005284.1 + 8065 0.66 0.518925
Target:  5'- cGCCGGAUgGuuGgCGGCGGCUAUu- -3'
miRNA:   3'- cCGGUCUGgCugCgGCUGCCGAUGug -5'
24936 5' -58.9 NC_005284.1 + 8191 0.68 0.440106
Target:  5'- uGCacgGGGCCGaACGCCGccgcgaccGCGGUUGCAUc -3'
miRNA:   3'- cCGg--UCUGGC-UGCGGC--------UGCCGAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 8851 0.67 0.498642
Target:  5'- -aCCAGAUCGAuuuCGCgauugcgcagaaCGACGuGCUGCGCa -3'
miRNA:   3'- ccGGUCUGGCU---GCG------------GCUGC-CGAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 9776 0.66 0.518925
Target:  5'- aGCCAG-CCGucaAUGCCGACugcaucgcaaGGCUuucGCGCa -3'
miRNA:   3'- cCGGUCuGGC---UGCGGCUG----------CCGA---UGUG- -5'
24936 5' -58.9 NC_005284.1 + 10011 0.66 0.539526
Target:  5'- cGCCucaAGcGCCGuACGCCG-CuGCUGCGCg -3'
miRNA:   3'- cCGG---UC-UGGC-UGCGGCuGcCGAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 10354 0.66 0.543681
Target:  5'- cGGCa--ACUGACGCCGcuGuuacaggaaucugagCGGCUGCGCa -3'
miRNA:   3'- -CCGgucUGGCUGCGGC--U---------------GCCGAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 10946 0.67 0.459197
Target:  5'- uGGCCGGcCuCGuCGCCGgACGaGCggACGCa -3'
miRNA:   3'- -CCGGUCuG-GCuGCGGC-UGC-CGa-UGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.