miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24936 5' -58.9 NC_005284.1 + 11576 0.71 0.290963
Target:  5'- uGCgCAGAUCGACGCgGAgcuCGGCgacUACGCg -3'
miRNA:   3'- cCG-GUCUGGCUGCGgCU---GCCG---AUGUG- -5'
24936 5' -58.9 NC_005284.1 + 12211 0.69 0.377052
Target:  5'- uGCCGcaccACCGagcGCGCCGACGGCaucagagACACc -3'
miRNA:   3'- cCGGUc---UGGC---UGCGGCUGCCGa------UGUG- -5'
24936 5' -58.9 NC_005284.1 + 12653 0.66 0.52713
Target:  5'- uGCguGugCGcaaagcccaguuCGgCGACGGCUACACc -3'
miRNA:   3'- cCGguCugGCu-----------GCgGCUGCCGAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 12754 0.66 0.529189
Target:  5'- cGGCCcGcuggguguaGCCGuCGCCGAacugGGCUuuGCGCa -3'
miRNA:   3'- -CCGGuC---------UGGCuGCGGCUg---CCGA--UGUG- -5'
24936 5' -58.9 NC_005284.1 + 14391 0.71 0.257228
Target:  5'- uGCaCGGAaaUCGGCGCCGACauGCUGCGCu -3'
miRNA:   3'- cCG-GUCU--GGCUGCGGCUGc-CGAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 14524 0.68 0.440106
Target:  5'- aGCCAucGCCGACGCUG-CGGgUGgGCg -3'
miRNA:   3'- cCGGUc-UGGCUGCGGCuGCCgAUgUG- -5'
24936 5' -58.9 NC_005284.1 + 14718 0.7 0.305397
Target:  5'- cGGCCGGAaaauucaCGGCGUCGA-GGUaGCGCg -3'
miRNA:   3'- -CCGGUCUg------GCUGCGGCUgCCGaUGUG- -5'
24936 5' -58.9 NC_005284.1 + 15047 0.66 0.529189
Target:  5'- cGCaCAGGaaGcCGCCGaACGGCaGCGCg -3'
miRNA:   3'- cCG-GUCUggCuGCGGC-UGCCGaUGUG- -5'
24936 5' -58.9 NC_005284.1 + 15178 0.66 0.557252
Target:  5'- cGGCCGugccGACCGaccaguucgcgcucGCGUCGGaGGaCUACGCa -3'
miRNA:   3'- -CCGGU----CUGGC--------------UGCGGCUgCC-GAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 15748 0.69 0.343857
Target:  5'- gGGgCGGAauGugGgCCGACaGCUGCACg -3'
miRNA:   3'- -CCgGUCUggCugC-GGCUGcCGAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 16672 0.71 0.290963
Target:  5'- cGGCCgucgagcgugAGGCCGGCGUCGGCGuGCcGCu- -3'
miRNA:   3'- -CCGG----------UCUGGCUGCGGCUGC-CGaUGug -5'
24936 5' -58.9 NC_005284.1 + 17863 0.69 0.377052
Target:  5'- uGCCgacccaaagaAGGCCGGcCGCCGGauCGGCggGCGCa -3'
miRNA:   3'- cCGG----------UCUGGCU-GCGGCU--GCCGa-UGUG- -5'
24936 5' -58.9 NC_005284.1 + 18030 0.68 0.421474
Target:  5'- cGCCGuGAagCGAuCGCCGGCGGCgauugucgGCGCc -3'
miRNA:   3'- cCGGU-CUg-GCU-GCGGCUGCCGa-------UGUG- -5'
24936 5' -58.9 NC_005284.1 + 18122 0.66 0.560398
Target:  5'- -aCCGGAUCGGCGUCGAagcgcuCGGCga-GCg -3'
miRNA:   3'- ccGGUCUGGCUGCGGCU------GCCGaugUG- -5'
24936 5' -58.9 NC_005284.1 + 18347 0.76 0.120212
Target:  5'- aGG-CGGACguuCGACGgCGGCGGCUGCACc -3'
miRNA:   3'- -CCgGUCUG---GCUGCgGCUGCCGAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 18897 0.75 0.161624
Target:  5'- cGGCCAGAUCGGgaaGUCGGCGcuuggcacggaGCUGCGCg -3'
miRNA:   3'- -CCGGUCUGGCUg--CGGCUGC-----------CGAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 20033 0.66 0.559349
Target:  5'- aGCCAGcCCGGCaCCGGCGuucgauuGCUGCu- -3'
miRNA:   3'- cCGGUCuGGCUGcGGCUGC-------CGAUGug -5'
24936 5' -58.9 NC_005284.1 + 21279 0.68 0.412339
Target:  5'- -aUCGGGCCGcGCGCCuacuGCGGCaGCACa -3'
miRNA:   3'- ccGGUCUGGC-UGCGGc---UGCCGaUGUG- -5'
24936 5' -58.9 NC_005284.1 + 21746 0.67 0.468906
Target:  5'- aGCCugcGGGCUGcucuUGCCGcuggcacugaGCGGCUGCGCg -3'
miRNA:   3'- cCGG---UCUGGCu---GCGGC----------UGCCGAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 21746 0.75 0.161624
Target:  5'- cGGCCAccGCCGACG-CGGCGGCaucgUGCGCg -3'
miRNA:   3'- -CCGGUc-UGGCUGCgGCUGCCG----AUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.