miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24936 5' -58.9 NC_005284.1 + 53775 0.66 0.539526
Target:  5'- cGGUUu-GCUGAUGCCGGCuGCUGCGg -3'
miRNA:   3'- -CCGGucUGGCUGCGGCUGcCGAUGUg -5'
24936 5' -58.9 NC_005284.1 + 52930 0.69 0.359358
Target:  5'- cGGCaGGgcGCCGAaGCCGAUGGCUuuccucgACGCa -3'
miRNA:   3'- -CCGgUC--UGGCUgCGGCUGCCGA-------UGUG- -5'
24936 5' -58.9 NC_005284.1 + 50299 0.71 0.277069
Target:  5'- cGGCC-GACCGuCGCCGAgGGUucgaaguauUugGCg -3'
miRNA:   3'- -CCGGuCUGGCuGCGGCUgCCG---------AugUG- -5'
24936 5' -58.9 NC_005284.1 + 48238 0.77 0.106005
Target:  5'- uGGCgcaaAGACUGACGCUGACGGCgcguugccgugcggGCACu -3'
miRNA:   3'- -CCGg---UCUGGCUGCGGCUGCCGa-------------UGUG- -5'
24936 5' -58.9 NC_005284.1 + 47733 0.69 0.385681
Target:  5'- aGGCCGuGCuCGGCGguaCGGCGGC-GCGCg -3'
miRNA:   3'- -CCGGUcUG-GCUGCg--GCUGCCGaUGUG- -5'
24936 5' -58.9 NC_005284.1 + 47676 0.67 0.449595
Target:  5'- aGGCguuGAUCGAUGCCGcugACGGCaaggaaggGCACg -3'
miRNA:   3'- -CCGgu-CUGGCUGCGGC---UGCCGa-------UGUG- -5'
24936 5' -58.9 NC_005284.1 + 47600 0.66 0.508741
Target:  5'- cGGUCGGcACCucGACGCCGAacacgaCGGCgauaGCAUc -3'
miRNA:   3'- -CCGGUC-UGG--CUGCGGCU------GCCGa---UGUG- -5'
24936 5' -58.9 NC_005284.1 + 46867 0.66 0.549932
Target:  5'- cGCCAaccGACCGgaccuuGCGCCGGCgauugaacccGGCUuCGCa -3'
miRNA:   3'- cCGGU---CUGGC------UGCGGCUG----------CCGAuGUG- -5'
24936 5' -58.9 NC_005284.1 + 46541 0.67 0.488633
Target:  5'- cGCCAGcguCgGACGCuCGGCGGCauucgGCGa -3'
miRNA:   3'- cCGGUCu--GgCUGCG-GCUGCCGa----UGUg -5'
24936 5' -58.9 NC_005284.1 + 46466 0.67 0.47872
Target:  5'- cGCCgAGcguCCGACGCUGGCGuuaGCUGCuCg -3'
miRNA:   3'- cCGG-UCu--GGCUGCGGCUGC---CGAUGuG- -5'
24936 5' -58.9 NC_005284.1 + 46289 0.66 0.518925
Target:  5'- cGGCCAGuucuCCcACGaCuCGGgaGGCUGCGCg -3'
miRNA:   3'- -CCGGUCu---GGcUGC-G-GCUg-CCGAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 46011 0.66 0.518925
Target:  5'- aGGUCAGACCagauaGGCGCCuGAucaaUGGCUucCGCu -3'
miRNA:   3'- -CCGGUCUGG-----CUGCGG-CU----GCCGAu-GUG- -5'
24936 5' -58.9 NC_005284.1 + 45692 0.67 0.449595
Target:  5'- cGCCuucacGACCGcGCGUCGAcaCGGCUGUACa -3'
miRNA:   3'- cCGGu----CUGGC-UGCGGCU--GCCGAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 44239 0.68 0.402432
Target:  5'- gGGCCgguaguggaacugGGAUUGGuCGCUGAUGGCgGCACc -3'
miRNA:   3'- -CCGG-------------UCUGGCU-GCGGCUGCCGaUGUG- -5'
24936 5' -58.9 NC_005284.1 + 42885 0.66 0.518925
Target:  5'- gGGCCucucGAUggaCGAUGCCGAgaGGCgGCACc -3'
miRNA:   3'- -CCGGu---CUG---GCUGCGGCUg-CCGaUGUG- -5'
24936 5' -58.9 NC_005284.1 + 41605 0.68 0.440106
Target:  5'- cGCgAGGCCG-CGCCGaguGCGaGCUccgACACg -3'
miRNA:   3'- cCGgUCUGGCuGCGGC---UGC-CGA---UGUG- -5'
24936 5' -58.9 NC_005284.1 + 40302 0.66 0.560398
Target:  5'- cGGCUAcACCGuagaGCCGAcCGGUUGCu- -3'
miRNA:   3'- -CCGGUcUGGCug--CGGCU-GCCGAUGug -5'
24936 5' -58.9 NC_005284.1 + 40228 0.68 0.412339
Target:  5'- cGGCCAGACC-ACGuCCGcauCGGCaGgACc -3'
miRNA:   3'- -CCGGUCUGGcUGC-GGCu--GCCGaUgUG- -5'
24936 5' -58.9 NC_005284.1 + 38338 0.66 0.539526
Target:  5'- uGCCGGGC--GCGCUGGCGGCaccaggACAa -3'
miRNA:   3'- cCGGUCUGgcUGCGGCUGCCGa-----UGUg -5'
24936 5' -58.9 NC_005284.1 + 37289 0.66 0.539526
Target:  5'- cGGUCAacACCGACaUCGGCGucaGCUACGCg -3'
miRNA:   3'- -CCGGUc-UGGCUGcGGCUGC---CGAUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.