miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24936 5' -58.9 NC_005284.1 + 36852 0.66 0.529189
Target:  5'- uGCUuuGCCG-CGuCCGccuCGGCUGCACg -3'
miRNA:   3'- cCGGucUGGCuGC-GGCu--GCCGAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 34366 0.67 0.449595
Target:  5'- cGCUgacGGACgagcacaucgCGACGCUGAaacUGGCUGCGCg -3'
miRNA:   3'- cCGG---UCUG----------GCUGCGGCU---GCCGAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 34030 0.68 0.430731
Target:  5'- cGCCGG-CCGACgaGCgGGCGGCgcuucCGCa -3'
miRNA:   3'- cCGGUCuGGCUG--CGgCUGCCGau---GUG- -5'
24936 5' -58.9 NC_005284.1 + 33954 0.66 0.529189
Target:  5'- cGCCGcccgcucgucGGCCGGCGCUGcuGCGgGCUGCuCg -3'
miRNA:   3'- cCGGU----------CUGGCUGCGGC--UGC-CGAUGuG- -5'
24936 5' -58.9 NC_005284.1 + 33375 0.72 0.226762
Target:  5'- cGUCGG-CCGGCgcuGCCGACGGCU-CGCc -3'
miRNA:   3'- cCGGUCuGGCUG---CGGCUGCCGAuGUG- -5'
24936 5' -58.9 NC_005284.1 + 32865 0.71 0.270323
Target:  5'- cGCgCAGGCCGACGCac-CGGCagagGCGCg -3'
miRNA:   3'- cCG-GUCUGGCUGCGgcuGCCGa---UGUG- -5'
24936 5' -58.9 NC_005284.1 + 32788 0.7 0.312817
Target:  5'- cGGCCGGACUG-CG-CGACGGaaaaGCGCu -3'
miRNA:   3'- -CCGGUCUGGCuGCgGCUGCCga--UGUG- -5'
24936 5' -58.9 NC_005284.1 + 31518 0.67 0.488633
Target:  5'- gGGCCcGGC--GCGCCGcaGCGGC-GCACg -3'
miRNA:   3'- -CCGGuCUGgcUGCGGC--UGCCGaUGUG- -5'
24936 5' -58.9 NC_005284.1 + 31309 0.69 0.371937
Target:  5'- cGCCGGAUCGAcaguguugucgaaaaCGUCGGCGaGCgACGCg -3'
miRNA:   3'- cCGGUCUGGCU---------------GCGGCUGC-CGaUGUG- -5'
24936 5' -58.9 NC_005284.1 + 31059 0.73 0.199409
Target:  5'- cGCCAGuucgaacuacGCCGACcaGCCGACGGCggccUACAUu -3'
miRNA:   3'- cCGGUC----------UGGCUG--CGGCUGCCG----AUGUG- -5'
24936 5' -58.9 NC_005284.1 + 30921 0.67 0.488633
Target:  5'- -aUCGGGCgGGCGCCGugGcGCUuuCGCc -3'
miRNA:   3'- ccGGUCUGgCUGCGGCugC-CGAu-GUG- -5'
24936 5' -58.9 NC_005284.1 + 30743 0.77 0.110758
Target:  5'- cGCCGG-CCGGCuGCuCGACGGCcGCACg -3'
miRNA:   3'- cCGGUCuGGCUG-CG-GCUGCCGaUGUG- -5'
24936 5' -58.9 NC_005284.1 + 30678 0.69 0.385681
Target:  5'- aGCCGG-CCGGCggcuuucuuGCCGACGcGCUcuGCAUa -3'
miRNA:   3'- cCGGUCuGGCUG---------CGGCUGC-CGA--UGUG- -5'
24936 5' -58.9 NC_005284.1 + 30559 0.69 0.385681
Target:  5'- cGCCAGuuCGgacgugauggucACGCCGGcCGGCaGCACa -3'
miRNA:   3'- cCGGUCugGC------------UGCGGCU-GCCGaUGUG- -5'
24936 5' -58.9 NC_005284.1 + 29855 0.69 0.385681
Target:  5'- cGGUCAaGCCGACGCaucucgCGAUGGUcgGCGCc -3'
miRNA:   3'- -CCGGUcUGGCUGCG------GCUGCCGa-UGUG- -5'
24936 5' -58.9 NC_005284.1 + 26937 0.66 0.518925
Target:  5'- cGCCGGGCgGGCGUCGucUGGCgacucccaGCGCu -3'
miRNA:   3'- cCGGUCUGgCUGCGGCu-GCCGa-------UGUG- -5'
24936 5' -58.9 NC_005284.1 + 25750 0.68 0.430731
Target:  5'- aGGCUuGGCUcGCGCgaACGGCUGCGCc -3'
miRNA:   3'- -CCGGuCUGGcUGCGgcUGCCGAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 25658 0.66 0.529189
Target:  5'- aGUCGGcaACCGccGCGCgGACGGCgggaucgaaUGCACg -3'
miRNA:   3'- cCGGUC--UGGC--UGCGgCUGCCG---------AUGUG- -5'
24936 5' -58.9 NC_005284.1 + 24561 1.12 0.000296
Target:  5'- cGGCCAGACCGACGCCGACGGCUACACg -3'
miRNA:   3'- -CCGGUCUGGCUGCGGCUGCCGAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 21935 0.67 0.47872
Target:  5'- cGCgAGAUCGACaaaCUGACGGcCUACAg -3'
miRNA:   3'- cCGgUCUGGCUGc--GGCUGCC-GAUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.