Results 41 - 60 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24936 | 5' | -58.9 | NC_005284.1 | + | 21923 | 0.67 | 0.482673 |
Target: 5'- cGGCaccaucGCCcACGCCGGCGGCgcuggaagcgccggGCACg -3' miRNA: 3'- -CCGguc---UGGcUGCGGCUGCCGa-------------UGUG- -5' |
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24936 | 5' | -58.9 | NC_005284.1 | + | 21746 | 0.67 | 0.468906 |
Target: 5'- aGCCugcGGGCUGcucuUGCCGcuggcacugaGCGGCUGCGCg -3' miRNA: 3'- cCGG---UCUGGCu---GCGGC----------UGCCGAUGUG- -5' |
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24936 | 5' | -58.9 | NC_005284.1 | + | 21746 | 0.75 | 0.161624 |
Target: 5'- cGGCCAccGCCGACG-CGGCGGCaucgUGCGCg -3' miRNA: 3'- -CCGGUc-UGGCUGCgGCUGCCG----AUGUG- -5' |
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24936 | 5' | -58.9 | NC_005284.1 | + | 21279 | 0.68 | 0.412339 |
Target: 5'- -aUCGGGCCGcGCGCCuacuGCGGCaGCACa -3' miRNA: 3'- ccGGUCUGGC-UGCGGc---UGCCGaUGUG- -5' |
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24936 | 5' | -58.9 | NC_005284.1 | + | 20033 | 0.66 | 0.559349 |
Target: 5'- aGCCAGcCCGGCaCCGGCGuucgauuGCUGCu- -3' miRNA: 3'- cCGGUCuGGCUGcGGCUGC-------CGAUGug -5' |
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24936 | 5' | -58.9 | NC_005284.1 | + | 18897 | 0.75 | 0.161624 |
Target: 5'- cGGCCAGAUCGGgaaGUCGGCGcuuggcacggaGCUGCGCg -3' miRNA: 3'- -CCGGUCUGGCUg--CGGCUGC-----------CGAUGUG- -5' |
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24936 | 5' | -58.9 | NC_005284.1 | + | 18347 | 0.76 | 0.120212 |
Target: 5'- aGG-CGGACguuCGACGgCGGCGGCUGCACc -3' miRNA: 3'- -CCgGUCUG---GCUGCgGCUGCCGAUGUG- -5' |
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24936 | 5' | -58.9 | NC_005284.1 | + | 18122 | 0.66 | 0.560398 |
Target: 5'- -aCCGGAUCGGCGUCGAagcgcuCGGCga-GCg -3' miRNA: 3'- ccGGUCUGGCUGCGGCU------GCCGaugUG- -5' |
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24936 | 5' | -58.9 | NC_005284.1 | + | 18030 | 0.68 | 0.421474 |
Target: 5'- cGCCGuGAagCGAuCGCCGGCGGCgauugucgGCGCc -3' miRNA: 3'- cCGGU-CUg-GCU-GCGGCUGCCGa-------UGUG- -5' |
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24936 | 5' | -58.9 | NC_005284.1 | + | 17863 | 0.69 | 0.377052 |
Target: 5'- uGCCgacccaaagaAGGCCGGcCGCCGGauCGGCggGCGCa -3' miRNA: 3'- cCGG----------UCUGGCU-GCGGCU--GCCGa-UGUG- -5' |
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24936 | 5' | -58.9 | NC_005284.1 | + | 16672 | 0.71 | 0.290963 |
Target: 5'- cGGCCgucgagcgugAGGCCGGCGUCGGCGuGCcGCu- -3' miRNA: 3'- -CCGG----------UCUGGCUGCGGCUGC-CGaUGug -5' |
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24936 | 5' | -58.9 | NC_005284.1 | + | 15748 | 0.69 | 0.343857 |
Target: 5'- gGGgCGGAauGugGgCCGACaGCUGCACg -3' miRNA: 3'- -CCgGUCUggCugC-GGCUGcCGAUGUG- -5' |
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24936 | 5' | -58.9 | NC_005284.1 | + | 15178 | 0.66 | 0.557252 |
Target: 5'- cGGCCGugccGACCGaccaguucgcgcucGCGUCGGaGGaCUACGCa -3' miRNA: 3'- -CCGGU----CUGGC--------------UGCGGCUgCC-GAUGUG- -5' |
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24936 | 5' | -58.9 | NC_005284.1 | + | 15047 | 0.66 | 0.529189 |
Target: 5'- cGCaCAGGaaGcCGCCGaACGGCaGCGCg -3' miRNA: 3'- cCG-GUCUggCuGCGGC-UGCCGaUGUG- -5' |
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24936 | 5' | -58.9 | NC_005284.1 | + | 14718 | 0.7 | 0.305397 |
Target: 5'- cGGCCGGAaaauucaCGGCGUCGA-GGUaGCGCg -3' miRNA: 3'- -CCGGUCUg------GCUGCGGCUgCCGaUGUG- -5' |
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24936 | 5' | -58.9 | NC_005284.1 | + | 14524 | 0.68 | 0.440106 |
Target: 5'- aGCCAucGCCGACGCUG-CGGgUGgGCg -3' miRNA: 3'- cCGGUc-UGGCUGCGGCuGCCgAUgUG- -5' |
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24936 | 5' | -58.9 | NC_005284.1 | + | 14391 | 0.71 | 0.257228 |
Target: 5'- uGCaCGGAaaUCGGCGCCGACauGCUGCGCu -3' miRNA: 3'- cCG-GUCU--GGCUGCGGCUGc-CGAUGUG- -5' |
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24936 | 5' | -58.9 | NC_005284.1 | + | 12754 | 0.66 | 0.529189 |
Target: 5'- cGGCCcGcuggguguaGCCGuCGCCGAacugGGCUuuGCGCa -3' miRNA: 3'- -CCGGuC---------UGGCuGCGGCUg---CCGA--UGUG- -5' |
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24936 | 5' | -58.9 | NC_005284.1 | + | 12653 | 0.66 | 0.52713 |
Target: 5'- uGCguGugCGcaaagcccaguuCGgCGACGGCUACACc -3' miRNA: 3'- cCGguCugGCu-----------GCgGCUGCCGAUGUG- -5' |
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24936 | 5' | -58.9 | NC_005284.1 | + | 12211 | 0.69 | 0.377052 |
Target: 5'- uGCCGcaccACCGagcGCGCCGACGGCaucagagACACc -3' miRNA: 3'- cCGGUc---UGGC---UGCGGCUGCCGa------UGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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