miRNA display CGI


Results 41 - 60 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24936 5' -58.9 NC_005284.1 + 21279 0.68 0.412339
Target:  5'- -aUCGGGCCGcGCGCCuacuGCGGCaGCACa -3'
miRNA:   3'- ccGGUCUGGC-UGCGGc---UGCCGaUGUG- -5'
24936 5' -58.9 NC_005284.1 + 44239 0.68 0.402432
Target:  5'- gGGCCgguaguggaacugGGAUUGGuCGCUGAUGGCgGCACc -3'
miRNA:   3'- -CCGG-------------UCUGGCU-GCGGCUGCCGaUGUG- -5'
24936 5' -58.9 NC_005284.1 + 29855 0.69 0.385681
Target:  5'- cGGUCAaGCCGACGCaucucgCGAUGGUcgGCGCc -3'
miRNA:   3'- -CCGGUcUGGCUGCG------GCUGCCGa-UGUG- -5'
24936 5' -58.9 NC_005284.1 + 47733 0.69 0.385681
Target:  5'- aGGCCGuGCuCGGCGguaCGGCGGC-GCGCg -3'
miRNA:   3'- -CCGGUcUG-GCUGCg--GCUGCCGaUGUG- -5'
24936 5' -58.9 NC_005284.1 + 30678 0.69 0.385681
Target:  5'- aGCCGG-CCGGCggcuuucuuGCCGACGcGCUcuGCAUa -3'
miRNA:   3'- cCGGUCuGGCUG---------CGGCUGC-CGA--UGUG- -5'
24936 5' -58.9 NC_005284.1 + 17863 0.69 0.377052
Target:  5'- uGCCgacccaaagaAGGCCGGcCGCCGGauCGGCggGCGCa -3'
miRNA:   3'- cCGG----------UCUGGCU-GCGGCU--GCCGa-UGUG- -5'
24936 5' -58.9 NC_005284.1 + 5780 0.69 0.377052
Target:  5'- uGGCC-GACCaaACGCCGAUcguuucgcucgaGGUUGCGCu -3'
miRNA:   3'- -CCGGuCUGGc-UGCGGCUG------------CCGAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 31309 0.69 0.371937
Target:  5'- cGCCGGAUCGAcaguguugucgaaaaCGUCGGCGaGCgACGCg -3'
miRNA:   3'- cCGGUCUGGCU---------------GCGGCUGC-CGaUGUG- -5'
24936 5' -58.9 NC_005284.1 + 25658 0.66 0.529189
Target:  5'- aGUCGGcaACCGccGCGCgGACGGCgggaucgaaUGCACg -3'
miRNA:   3'- cCGGUC--UGGC--UGCGgCUGCCG---------AUGUG- -5'
24936 5' -58.9 NC_005284.1 + 12754 0.66 0.529189
Target:  5'- cGGCCcGcuggguguaGCCGuCGCCGAacugGGCUuuGCGCa -3'
miRNA:   3'- -CCGGuC---------UGGCuGCGGCUg---CCGA--UGUG- -5'
24936 5' -58.9 NC_005284.1 + 46289 0.66 0.518925
Target:  5'- cGGCCAGuucuCCcACGaCuCGGgaGGCUGCGCg -3'
miRNA:   3'- -CCGGUCu---GGcUGC-G-GCUg-CCGAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 9776 0.66 0.518925
Target:  5'- aGCCAG-CCGucaAUGCCGACugcaucgcaaGGCUuucGCGCa -3'
miRNA:   3'- cCGGUCuGGC---UGCGGCUG----------CCGA---UGUG- -5'
24936 5' -58.9 NC_005284.1 + 46011 0.66 0.518925
Target:  5'- aGGUCAGACCagauaGGCGCCuGAucaaUGGCUucCGCu -3'
miRNA:   3'- -CCGGUCUGG-----CUGCGG-CU----GCCGAu-GUG- -5'
24936 5' -58.9 NC_005284.1 + 15047 0.66 0.529189
Target:  5'- cGCaCAGGaaGcCGCCGaACGGCaGCGCg -3'
miRNA:   3'- cCG-GUCUggCuGCGGC-UGCCGaUGUG- -5'
24936 5' -58.9 NC_005284.1 + 38338 0.66 0.539526
Target:  5'- uGCCGGGC--GCGCUGGCGGCaccaggACAa -3'
miRNA:   3'- cCGGUCUGgcUGCGGCUGCCGa-----UGUg -5'
24936 5' -58.9 NC_005284.1 + 37289 0.66 0.539526
Target:  5'- cGGUCAacACCGACaUCGGCGucaGCUACGCg -3'
miRNA:   3'- -CCGGUc-UGGCUGcGGCUGC---CGAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 5160 0.66 0.539526
Target:  5'- uGCCAGACgGAucuUGUCGAuCGGCgucGCAUu -3'
miRNA:   3'- cCGGUCUGgCU---GCGGCU-GCCGa--UGUG- -5'
24936 5' -58.9 NC_005284.1 + 10011 0.66 0.539526
Target:  5'- cGCCucaAGcGCCGuACGCCG-CuGCUGCGCg -3'
miRNA:   3'- cCGG---UC-UGGC-UGCGGCuGcCGAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 20033 0.66 0.559349
Target:  5'- aGCCAGcCCGGCaCCGGCGuucgauuGCUGCu- -3'
miRNA:   3'- cCGGUCuGGCUGcGGCUGC-------CGAUGug -5'
24936 5' -58.9 NC_005284.1 + 30743 0.77 0.110758
Target:  5'- cGCCGG-CCGGCuGCuCGACGGCcGCACg -3'
miRNA:   3'- cCGGUCuGGCUG-CG-GCUGCCGaUGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.