miRNA display CGI


Results 61 - 80 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24936 5' -58.9 NC_005284.1 + 21746 0.75 0.161624
Target:  5'- cGGCCAccGCCGACG-CGGCGGCaucgUGCGCg -3'
miRNA:   3'- -CCGGUc-UGGCUGCgGCUGCCG----AUGUG- -5'
24936 5' -58.9 NC_005284.1 + 18347 0.76 0.120212
Target:  5'- aGG-CGGACguuCGACGgCGGCGGCUGCACc -3'
miRNA:   3'- -CCgGUCUG---GCUGCgGCUGCCGAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 30743 0.77 0.110758
Target:  5'- cGCCGG-CCGGCuGCuCGACGGCcGCACg -3'
miRNA:   3'- cCGGUCuGGCUG-CG-GCUGCCGaUGUG- -5'
24936 5' -58.9 NC_005284.1 + 8191 0.68 0.440106
Target:  5'- uGCacgGGGCCGaACGCCGccgcgaccGCGGUUGCAUc -3'
miRNA:   3'- cCGg--UCUGGC-UGCGGC--------UGCCGAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 34366 0.67 0.449595
Target:  5'- cGCUgacGGACgagcacaucgCGACGCUGAaacUGGCUGCGCg -3'
miRNA:   3'- cCGG---UCUG----------GCUGCGGCU---GCCGAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 21923 0.67 0.482673
Target:  5'- cGGCaccaucGCCcACGCCGGCGGCgcuggaagcgccggGCACg -3'
miRNA:   3'- -CCGguc---UGGcUGCGGCUGCCGa-------------UGUG- -5'
24936 5' -58.9 NC_005284.1 + 20033 0.66 0.559349
Target:  5'- aGCCAGcCCGGCaCCGGCGuucgauuGCUGCu- -3'
miRNA:   3'- cCGGUCuGGCUGcGGCUGC-------CGAUGug -5'
24936 5' -58.9 NC_005284.1 + 10011 0.66 0.539526
Target:  5'- cGCCucaAGcGCCGuACGCCG-CuGCUGCGCg -3'
miRNA:   3'- cCGG---UC-UGGC-UGCGGCuGcCGAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 5160 0.66 0.539526
Target:  5'- uGCCAGACgGAucuUGUCGAuCGGCgucGCAUu -3'
miRNA:   3'- cCGGUCUGgCU---GCGGCU-GCCGa--UGUG- -5'
24936 5' -58.9 NC_005284.1 + 37289 0.66 0.539526
Target:  5'- cGGUCAacACCGACaUCGGCGucaGCUACGCg -3'
miRNA:   3'- -CCGGUc-UGGCUGcGGCUGC---CGAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 38338 0.66 0.539526
Target:  5'- uGCCGGGC--GCGCUGGCGGCaccaggACAa -3'
miRNA:   3'- cCGGUCUGgcUGCGGCUGCCGa-----UGUg -5'
24936 5' -58.9 NC_005284.1 + 15047 0.66 0.529189
Target:  5'- cGCaCAGGaaGcCGCCGaACGGCaGCGCg -3'
miRNA:   3'- cCG-GUCUggCuGCGGC-UGCCGaUGUG- -5'
24936 5' -58.9 NC_005284.1 + 25658 0.66 0.529189
Target:  5'- aGUCGGcaACCGccGCGCgGACGGCgggaucgaaUGCACg -3'
miRNA:   3'- cCGGUC--UGGC--UGCGgCUGCCG---------AUGUG- -5'
24936 5' -58.9 NC_005284.1 + 12754 0.66 0.529189
Target:  5'- cGGCCcGcuggguguaGCCGuCGCCGAacugGGCUuuGCGCa -3'
miRNA:   3'- -CCGGuC---------UGGCuGCGGCUg---CCGA--UGUG- -5'
24936 5' -58.9 NC_005284.1 + 46289 0.66 0.518925
Target:  5'- cGGCCAGuucuCCcACGaCuCGGgaGGCUGCGCg -3'
miRNA:   3'- -CCGGUCu---GGcUGC-G-GCUg-CCGAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 9776 0.66 0.518925
Target:  5'- aGCCAG-CCGucaAUGCCGACugcaucgcaaGGCUuucGCGCa -3'
miRNA:   3'- cCGGUCuGGC---UGCGGCUG----------CCGA---UGUG- -5'
24936 5' -58.9 NC_005284.1 + 46011 0.66 0.518925
Target:  5'- aGGUCAGACCagauaGGCGCCuGAucaaUGGCUucCGCu -3'
miRNA:   3'- -CCGGUCUGG-----CUGCGG-CU----GCCGAu-GUG- -5'
24936 5' -58.9 NC_005284.1 + 47600 0.66 0.508741
Target:  5'- cGGUCGGcACCucGACGCCGAacacgaCGGCgauaGCAUc -3'
miRNA:   3'- -CCGGUC-UGG--CUGCGGCU------GCCGa---UGUG- -5'
24936 5' -58.9 NC_005284.1 + 46541 0.67 0.488633
Target:  5'- cGCCAGcguCgGACGCuCGGCGGCauucgGCGa -3'
miRNA:   3'- cCGGUCu--GgCUGCG-GCUGCCGa----UGUg -5'
24936 5' -58.9 NC_005284.1 + 31518 0.67 0.488633
Target:  5'- gGGCCcGGC--GCGCCGcaGCGGC-GCACg -3'
miRNA:   3'- -CCGGuCUGgcUGCGGC--UGCCGaUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.