miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24936 5' -58.9 NC_005284.1 + 34030 0.68 0.430731
Target:  5'- cGCCGG-CCGACgaGCgGGCGGCgcuucCGCa -3'
miRNA:   3'- cCGGUCuGGCUG--CGgCUGCCGau---GUG- -5'
24936 5' -58.9 NC_005284.1 + 14718 0.7 0.305397
Target:  5'- cGGCCGGAaaauucaCGGCGUCGA-GGUaGCGCg -3'
miRNA:   3'- -CCGGUCUg------GCUGCGGCUgCCGaUGUG- -5'
24936 5' -58.9 NC_005284.1 + 8191 0.68 0.440106
Target:  5'- uGCacgGGGCCGaACGCCGccgcgaccGCGGUUGCAUc -3'
miRNA:   3'- cCGg--UCUGGC-UGCGGC--------UGCCGAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 10011 0.66 0.539526
Target:  5'- cGCCucaAGcGCCGuACGCCG-CuGCUGCGCg -3'
miRNA:   3'- cCGG---UC-UGGC-UGCGGCuGcCGAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 32788 0.7 0.312817
Target:  5'- cGGCCGGACUG-CG-CGACGGaaaaGCGCu -3'
miRNA:   3'- -CCGGUCUGGCuGCgGCUGCCga--UGUG- -5'
24936 5' -58.9 NC_005284.1 + 30559 0.69 0.385681
Target:  5'- cGCCAGuuCGgacgugauggucACGCCGGcCGGCaGCACa -3'
miRNA:   3'- cCGGUCugGC------------UGCGGCU-GCCGaUGUG- -5'
24936 5' -58.9 NC_005284.1 + 32865 0.71 0.270323
Target:  5'- cGCgCAGGCCGACGCac-CGGCagagGCGCg -3'
miRNA:   3'- cCG-GUCUGGCUGCGgcuGCCGa---UGUG- -5'
24936 5' -58.9 NC_005284.1 + 18347 0.76 0.120212
Target:  5'- aGG-CGGACguuCGACGgCGGCGGCUGCACc -3'
miRNA:   3'- -CCgGUCUG---GCUGCgGCUGCCGAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 20033 0.66 0.559349
Target:  5'- aGCCAGcCCGGCaCCGGCGuucgauuGCUGCu- -3'
miRNA:   3'- cCGGUCuGGCUGcGGCUGC-------CGAUGug -5'
24936 5' -58.9 NC_005284.1 + 18122 0.66 0.560398
Target:  5'- -aCCGGAUCGGCGUCGAagcgcuCGGCga-GCg -3'
miRNA:   3'- ccGGUCUGGCUGCGGCU------GCCGaugUG- -5'
24936 5' -58.9 NC_005284.1 + 37289 0.66 0.539526
Target:  5'- cGGUCAacACCGACaUCGGCGucaGCUACGCg -3'
miRNA:   3'- -CCGGUc-UGGCUGcGGCUGC---CGAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 25658 0.66 0.529189
Target:  5'- aGUCGGcaACCGccGCGCgGACGGCgggaucgaaUGCACg -3'
miRNA:   3'- cCGGUC--UGGC--UGCGgCUGCCG---------AUGUG- -5'
24936 5' -58.9 NC_005284.1 + 5160 0.66 0.539526
Target:  5'- uGCCAGACgGAucuUGUCGAuCGGCgucGCAUu -3'
miRNA:   3'- cCGGUCUGgCU---GCGGCU-GCCGa--UGUG- -5'
24936 5' -58.9 NC_005284.1 + 50299 0.71 0.277069
Target:  5'- cGGCC-GACCGuCGCCGAgGGUucgaaguauUugGCg -3'
miRNA:   3'- -CCGGuCUGGCuGCGGCUgCCG---------AugUG- -5'
24936 5' -58.9 NC_005284.1 + 46466 0.67 0.47872
Target:  5'- cGCCgAGcguCCGACGCUGGCGuuaGCUGCuCg -3'
miRNA:   3'- cCGG-UCu--GGCUGCGGCUGC---CGAUGuG- -5'
24936 5' -58.9 NC_005284.1 + 21935 0.67 0.47872
Target:  5'- cGCgAGAUCGACaaaCUGACGGcCUACAg -3'
miRNA:   3'- cCGgUCUGGCUGc--GGCUGCC-GAUGUg -5'
24936 5' -58.9 NC_005284.1 + 21746 0.67 0.468906
Target:  5'- aGCCugcGGGCUGcucuUGCCGcuggcacugaGCGGCUGCGCg -3'
miRNA:   3'- cCGG---UCUGGCu---GCGGC----------UGCCGAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 10946 0.67 0.459197
Target:  5'- uGGCCGGcCuCGuCGCCGgACGaGCggACGCa -3'
miRNA:   3'- -CCGGUCuG-GCuGCGGC-UGC-CGa-UGUG- -5'
24936 5' -58.9 NC_005284.1 + 31309 0.69 0.371937
Target:  5'- cGCCGGAUCGAcaguguugucgaaaaCGUCGGCGaGCgACGCg -3'
miRNA:   3'- cCGGUCUGGCU---------------GCGGCUGC-CGaUGUG- -5'
24936 5' -58.9 NC_005284.1 + 5780 0.69 0.377052
Target:  5'- uGGCC-GACCaaACGCCGAUcguuucgcucgaGGUUGCGCu -3'
miRNA:   3'- -CCGGuCUGGc-UGCGGCUG------------CCGAUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.