miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24936 5' -58.9 NC_005284.1 + 65 0.71 0.259805
Target:  5'- uGCCGGGCCGGggcagaaaacccaaGCCGACGGC-ACGg -3'
miRNA:   3'- cCGGUCUGGCUg-------------CGGCUGCCGaUGUg -5'
24936 5' -58.9 NC_005284.1 + 18897 0.75 0.161624
Target:  5'- cGGCCAGAUCGGgaaGUCGGCGcuuggcacggaGCUGCGCg -3'
miRNA:   3'- -CCGGUCUGGCUg--CGGCUGC-----------CGAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 46867 0.66 0.549932
Target:  5'- cGCCAaccGACCGgaccuuGCGCCGGCgauugaacccGGCUuCGCa -3'
miRNA:   3'- cCGGU---CUGGC------UGCGGCUG----------CCGAuGUG- -5'
24936 5' -58.9 NC_005284.1 + 10354 0.66 0.543681
Target:  5'- cGGCa--ACUGACGCCGcuGuuacaggaaucugagCGGCUGCGCa -3'
miRNA:   3'- -CCGgucUGGCUGCGGC--U---------------GCCGAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 53775 0.66 0.539526
Target:  5'- cGGUUu-GCUGAUGCCGGCuGCUGCGg -3'
miRNA:   3'- -CCGGucUGGCUGCGGCUGcCGAUGUg -5'
24936 5' -58.9 NC_005284.1 + 14524 0.68 0.440106
Target:  5'- aGCCAucGCCGACGCUG-CGGgUGgGCg -3'
miRNA:   3'- cCGGUc-UGGCUGCGGCuGCCgAUgUG- -5'
24936 5' -58.9 NC_005284.1 + 21279 0.68 0.412339
Target:  5'- -aUCGGGCCGcGCGCCuacuGCGGCaGCACa -3'
miRNA:   3'- ccGGUCUGGC-UGCGGc---UGCCGaUGUG- -5'
24936 5' -58.9 NC_005284.1 + 45692 0.67 0.449595
Target:  5'- cGCCuucacGACCGcGCGUCGAcaCGGCUGUACa -3'
miRNA:   3'- cCGGu----CUGGC-UGCGGCU--GCCGAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 47676 0.67 0.449595
Target:  5'- aGGCguuGAUCGAUGCCGcugACGGCaaggaaggGCACg -3'
miRNA:   3'- -CCGgu-CUGGCUGCGGC---UGCCGa-------UGUG- -5'
24936 5' -58.9 NC_005284.1 + 10946 0.67 0.459197
Target:  5'- uGGCCGGcCuCGuCGCCGgACGaGCggACGCa -3'
miRNA:   3'- -CCGGUCuG-GCuGCGGC-UGC-CGa-UGUG- -5'
24936 5' -58.9 NC_005284.1 + 21746 0.67 0.468906
Target:  5'- aGCCugcGGGCUGcucuUGCCGcuggcacugaGCGGCUGCGCg -3'
miRNA:   3'- cCGG---UCUGGCu---GCGGC----------UGCCGAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 21935 0.67 0.47872
Target:  5'- cGCgAGAUCGACaaaCUGACGGcCUACAg -3'
miRNA:   3'- cCGgUCUGGCUGc--GGCUGCC-GAUGUg -5'
24936 5' -58.9 NC_005284.1 + 46466 0.67 0.47872
Target:  5'- cGCCgAGcguCCGACGCUGGCGuuaGCUGCuCg -3'
miRNA:   3'- cCGG-UCu--GGCUGCGGCUGC---CGAUGuG- -5'
24936 5' -58.9 NC_005284.1 + 5780 0.69 0.377052
Target:  5'- uGGCC-GACCaaACGCCGAUcguuucgcucgaGGUUGCGCu -3'
miRNA:   3'- -CCGGuCUGGc-UGCGGCUG------------CCGAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 31309 0.69 0.371937
Target:  5'- cGCCGGAUCGAcaguguugucgaaaaCGUCGGCGaGCgACGCg -3'
miRNA:   3'- cCGGUCUGGCU---------------GCGGCUGC-CGaUGUG- -5'
24936 5' -58.9 NC_005284.1 + 41605 0.68 0.440106
Target:  5'- cGCgAGGCCG-CGCCGaguGCGaGCUccgACACg -3'
miRNA:   3'- cCGgUCUGGCuGCGGC---UGC-CGA---UGUG- -5'
24936 5' -58.9 NC_005284.1 + 7066 0.69 0.360188
Target:  5'- cGCCGacguucACCGACGCCGAuCGGCuUGC-Cg -3'
miRNA:   3'- cCGGUc-----UGGCUGCGGCU-GCCG-AUGuG- -5'
24936 5' -58.9 NC_005284.1 + 12653 0.66 0.52713
Target:  5'- uGCguGugCGcaaagcccaguuCGgCGACGGCUACACc -3'
miRNA:   3'- cCGguCugGCu-----------GCgGCUGCCGAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 33954 0.66 0.529189
Target:  5'- cGCCGcccgcucgucGGCCGGCGCUGcuGCGgGCUGCuCg -3'
miRNA:   3'- cCGGU----------CUGGCUGCGGC--UGC-CGAUGuG- -5'
24936 5' -58.9 NC_005284.1 + 36852 0.66 0.529189
Target:  5'- uGCUuuGCCG-CGuCCGccuCGGCUGCACg -3'
miRNA:   3'- cCGGucUGGCuGC-GGCu--GCCGAUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.