miRNA display CGI


Results 61 - 80 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24936 5' -58.9 NC_005284.1 + 44239 0.68 0.402432
Target:  5'- gGGCCgguaguggaacugGGAUUGGuCGCUGAUGGCgGCACc -3'
miRNA:   3'- -CCGG-------------UCUGGCU-GCGGCUGCCGaUGUG- -5'
24936 5' -58.9 NC_005284.1 + 21279 0.68 0.412339
Target:  5'- -aUCGGGCCGcGCGCCuacuGCGGCaGCACa -3'
miRNA:   3'- ccGGUCUGGC-UGCGGc---UGCCGaUGUG- -5'
24936 5' -58.9 NC_005284.1 + 40228 0.68 0.412339
Target:  5'- cGGCCAGACC-ACGuCCGcauCGGCaGgACc -3'
miRNA:   3'- -CCGGUCUGGcUGC-GGCu--GCCGaUgUG- -5'
24936 5' -58.9 NC_005284.1 + 12653 0.66 0.52713
Target:  5'- uGCguGugCGcaaagcccaguuCGgCGACGGCUACACc -3'
miRNA:   3'- cCGguCugGCu-----------GCgGCUGCCGAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 42885 0.66 0.518925
Target:  5'- gGGCCucucGAUggaCGAUGCCGAgaGGCgGCACc -3'
miRNA:   3'- -CCGGu---CUG---GCUGCGGCUg-CCGaUGUG- -5'
24936 5' -58.9 NC_005284.1 + 26937 0.66 0.518925
Target:  5'- cGCCGGGCgGGCGUCGucUGGCgacucccaGCGCu -3'
miRNA:   3'- cCGGUCUGgCUGCGGCu-GCCGa-------UGUG- -5'
24936 5' -58.9 NC_005284.1 + 8065 0.66 0.518925
Target:  5'- cGCCGGAUgGuuGgCGGCGGCUAUu- -3'
miRNA:   3'- cCGGUCUGgCugCgGCUGCCGAUGug -5'
24936 5' -58.9 NC_005284.1 + 7724 0.66 0.518925
Target:  5'- aGCuCGuGCCGcCGCCGGCGGCguaACu -3'
miRNA:   3'- cCG-GUcUGGCuGCGGCUGCCGaugUG- -5'
24936 5' -58.9 NC_005284.1 + 4740 0.66 0.508741
Target:  5'- uGCCGGGCCaGACGUCGuCGaGUaGCAUc -3'
miRNA:   3'- cCGGUCUGG-CUGCGGCuGC-CGaUGUG- -5'
24936 5' -58.9 NC_005284.1 + 3723 0.66 0.508741
Target:  5'- cGGCCGGG-CGuuGCCGGuucugUGGCaGCACg -3'
miRNA:   3'- -CCGGUCUgGCugCGGCU-----GCCGaUGUG- -5'
24936 5' -58.9 NC_005284.1 + 8851 0.67 0.498642
Target:  5'- -aCCAGAUCGAuuuCGCgauugcgcagaaCGACGuGCUGCGCa -3'
miRNA:   3'- ccGGUCUGGCU---GCG------------GCUGC-CGAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 5942 0.67 0.498642
Target:  5'- aGGCggCAGuuGCgGACGCC-ACGGCUgGCGCc -3'
miRNA:   3'- -CCG--GUC--UGgCUGCGGcUGCCGA-UGUG- -5'
24936 5' -58.9 NC_005284.1 + 46466 0.67 0.47872
Target:  5'- cGCCgAGcguCCGACGCUGGCGuuaGCUGCuCg -3'
miRNA:   3'- cCGG-UCu--GGCUGCGGCUGC---CGAUGuG- -5'
24936 5' -58.9 NC_005284.1 + 21935 0.67 0.47872
Target:  5'- cGCgAGAUCGACaaaCUGACGGcCUACAg -3'
miRNA:   3'- cCGgUCUGGCUGc--GGCUGCC-GAUGUg -5'
24936 5' -58.9 NC_005284.1 + 21746 0.67 0.468906
Target:  5'- aGCCugcGGGCUGcucuUGCCGcuggcacugaGCGGCUGCGCg -3'
miRNA:   3'- cCGG---UCUGGCu---GCGGC----------UGCCGAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 10946 0.67 0.459197
Target:  5'- uGGCCGGcCuCGuCGCCGgACGaGCggACGCa -3'
miRNA:   3'- -CCGGUCuG-GCuGCGGC-UGC-CGa-UGUG- -5'
24936 5' -58.9 NC_005284.1 + 47676 0.67 0.449595
Target:  5'- aGGCguuGAUCGAUGCCGcugACGGCaaggaaggGCACg -3'
miRNA:   3'- -CCGgu-CUGGCUGCGGC---UGCCGa-------UGUG- -5'
24936 5' -58.9 NC_005284.1 + 45692 0.67 0.449595
Target:  5'- cGCCuucacGACCGcGCGUCGAcaCGGCUGUACa -3'
miRNA:   3'- cCGGu----CUGGC-UGCGGCU--GCCGAUGUG- -5'
24936 5' -58.9 NC_005284.1 + 41605 0.68 0.440106
Target:  5'- cGCgAGGCCG-CGCCGaguGCGaGCUccgACACg -3'
miRNA:   3'- cCGgUCUGGCuGCGGC---UGC-CGA---UGUG- -5'
24936 5' -58.9 NC_005284.1 + 14524 0.68 0.440106
Target:  5'- aGCCAucGCCGACGCUG-CGGgUGgGCg -3'
miRNA:   3'- cCGGUc-UGGCUGCGGCuGCCgAUgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.