miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24937 3' -62.3 NC_005284.1 + 544 0.66 0.409635
Target:  5'- uCGGCUuugcgccgaccaggCGCUGCcgGCUCG-CCgGGUCGAg -3'
miRNA:   3'- -GCCGG--------------GCGAUG--UGGGCuGGgCCAGCU- -5'
24937 3' -62.3 NC_005284.1 + 40030 0.66 0.403516
Target:  5'- aCGGaa-GCUGCcgaCCGugUCGGUCGAg -3'
miRNA:   3'- -GCCgggCGAUGug-GGCugGGCCAGCU- -5'
24937 3' -62.3 NC_005284.1 + 148 0.66 0.403516
Target:  5'- uCGGCuuGgguuuuCUGC-CCCGGCCCGGcacugucgCGAu -3'
miRNA:   3'- -GCCGggC------GAUGuGGGCUGGGCCa-------GCU- -5'
24937 3' -62.3 NC_005284.1 + 37339 0.66 0.394875
Target:  5'- gGGCCCGUUgaaguaGCGCCCGgGCCCcuucacuUCGAc -3'
miRNA:   3'- gCCGGGCGA------UGUGGGC-UGGGcc-----AGCU- -5'
24937 3' -62.3 NC_005284.1 + 7484 0.66 0.386356
Target:  5'- cCGaGCUCgGCU-UGCCCGAUCCGGgCGAa -3'
miRNA:   3'- -GC-CGGG-CGAuGUGGGCUGGGCCaGCU- -5'
24937 3' -62.3 NC_005284.1 + 11948 0.66 0.377958
Target:  5'- -cGCCCGCUuCACgCCGACgCGccaGUCGGc -3'
miRNA:   3'- gcCGGGCGAuGUG-GGCUGgGC---CAGCU- -5'
24937 3' -62.3 NC_005284.1 + 39923 0.67 0.359114
Target:  5'- aGGUCgGCUGCugcguuuucgagccACUCGACCgacaCGGUCGGc -3'
miRNA:   3'- gCCGGgCGAUG--------------UGGGCUGG----GCCAGCU- -5'
24937 3' -62.3 NC_005284.1 + 431 0.67 0.345614
Target:  5'- uCGGCgcaaUGCUgGgGCUCGACCCGG-CGAg -3'
miRNA:   3'- -GCCGg---GCGA-UgUGGGCUGGGCCaGCU- -5'
24937 3' -62.3 NC_005284.1 + 51460 0.68 0.305896
Target:  5'- uCGaGCCCGCUGaaguuCACuguagagucagcggCCGAUCCGGUCa- -3'
miRNA:   3'- -GC-CGGGCGAU-----GUG--------------GGCUGGGCCAGcu -5'
24937 3' -62.3 NC_005284.1 + 54718 0.68 0.293919
Target:  5'- uGGCCCGUccgucguUGCCCG-CCCGG-CGGa -3'
miRNA:   3'- gCCGGGCGau-----GUGGGCuGGGCCaGCU- -5'
24937 3' -62.3 NC_005284.1 + 30987 0.68 0.293919
Target:  5'- gGcGCCCGCccgaUGCAuCCCGACUgGGcUCGGu -3'
miRNA:   3'- gC-CGGGCG----AUGU-GGGCUGGgCC-AGCU- -5'
24937 3' -62.3 NC_005284.1 + 10937 0.68 0.280301
Target:  5'- aGGCCCGC-AUGgCCGGCCUcGUCGc -3'
miRNA:   3'- gCCGGGCGaUGUgGGCUGGGcCAGCu -5'
24937 3' -62.3 NC_005284.1 + 46110 0.69 0.248456
Target:  5'- aGGCCUGCUcgACGCCCGGCgacagauaGGUCu- -3'
miRNA:   3'- gCCGGGCGA--UGUGGGCUGgg------CCAGcu -5'
24937 3' -62.3 NC_005284.1 + 33482 0.69 0.248456
Target:  5'- uCGGCCggCGCUGCugCCGACauagCGGggaagCGGg -3'
miRNA:   3'- -GCCGG--GCGAUGugGGCUGg---GCCa----GCU- -5'
24937 3' -62.3 NC_005284.1 + 37509 0.69 0.235999
Target:  5'- gCGGCCgGCUGCGauaacguCCCGGCCgGcuacGUCGGu -3'
miRNA:   3'- -GCCGGgCGAUGU-------GGGCUGGgC----CAGCU- -5'
24937 3' -62.3 NC_005284.1 + 50596 0.71 0.193765
Target:  5'- uGGCCUGCUucgGCgugCCGACCCGGUUc- -3'
miRNA:   3'- gCCGGGCGA---UGug-GGCUGGGCCAGcu -5'
24937 3' -62.3 NC_005284.1 + 8988 0.73 0.145675
Target:  5'- uCGGCCCGCUuguCACCaCGAUCagcaaggCGGUCGc -3'
miRNA:   3'- -GCCGGGCGAu--GUGG-GCUGG-------GCCAGCu -5'
24937 3' -62.3 NC_005284.1 + 8167 0.73 0.135037
Target:  5'- uCGGCaaGCUcgACgUCGACCCGGUCGAa -3'
miRNA:   3'- -GCCGggCGAugUG-GGCUGGGCCAGCU- -5'
24937 3' -62.3 NC_005284.1 + 39905 0.76 0.085865
Target:  5'- uCGGCCgCGCcaugcaaugcgGCACgCGGCCCGGUUGAa -3'
miRNA:   3'- -GCCGG-GCGa----------UGUGgGCUGGGCCAGCU- -5'
24937 3' -62.3 NC_005284.1 + 48064 0.78 0.061978
Target:  5'- cCGGUgCGCUGCGCauuacgcgCCGGCCCGGUCa- -3'
miRNA:   3'- -GCCGgGCGAUGUG--------GGCUGGGCCAGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.