Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24938 | 5' | -55.8 | NC_005284.1 | + | 6323 | 0.67 | 0.581492 |
Target: 5'- -cGAGUauGcGCAUUCGAUUUCGCCG-Cg -3' miRNA: 3'- aaCUCG--CaCGUAAGCUAGGGCGGCaG- -5' |
|||||||
24938 | 5' | -55.8 | NC_005284.1 | + | 12500 | 0.67 | 0.5705 |
Target: 5'- cUG-GCGcGCugaccgaGAUCCCGCCGUUg -3' miRNA: 3'- aACuCGCaCGuaag---CUAGGGCGGCAG- -5' |
|||||||
24938 | 5' | -55.8 | NC_005284.1 | + | 18231 | 0.72 | 0.296625 |
Target: 5'- gUUGAuCGUGUAgaCGAUCUgGCCGUCg -3' miRNA: 3'- -AACUcGCACGUaaGCUAGGgCGGCAG- -5' |
|||||||
24938 | 5' | -55.8 | NC_005284.1 | + | 25559 | 1.06 | 0.0012 |
Target: 5'- uUUGAGCGUGCAUUCGAUCCCGCCGUCc -3' miRNA: 3'- -AACUCGCACGUAAGCUAGGGCGGCAG- -5' |
|||||||
24938 | 5' | -55.8 | NC_005284.1 | + | 30260 | 0.67 | 0.5705 |
Target: 5'- -cGAGCGggcGCGUUCGu--UCGCUGUCg -3' miRNA: 3'- aaCUCGCa--CGUAAGCuagGGCGGCAG- -5' |
|||||||
24938 | 5' | -55.8 | NC_005284.1 | + | 30656 | 0.69 | 0.464601 |
Target: 5'- gUUGuGCGUGCGgccgUCGAgcagCCgGCCGg- -3' miRNA: 3'- -AACuCGCACGUa---AGCUa---GGgCGGCag -5' |
|||||||
24938 | 5' | -55.8 | NC_005284.1 | + | 37706 | 0.66 | 0.659121 |
Target: 5'- -gGGGCGcGCAUaCGGgccgcCCCGCCGa- -3' miRNA: 3'- aaCUCGCaCGUAaGCUa----GGGCGGCag -5' |
|||||||
24938 | 5' | -55.8 | NC_005284.1 | + | 43860 | 0.7 | 0.387738 |
Target: 5'- gUUGAGCGcGCcgUUGAUgaUCCGCgCGUCg -3' miRNA: 3'- -AACUCGCaCGuaAGCUA--GGGCG-GCAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home