Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24939 | 3' | -57.1 | NC_005284.1 | + | 38166 | 0.66 | 0.612109 |
Target: 5'- uCGCgUCUUCGuCCGCGCgacgagccacaUCGGCa--- -3' miRNA: 3'- uGCGgAGAAGC-GGCGCG-----------AGCUGaagu -5' |
|||||||
24939 | 3' | -57.1 | NC_005284.1 | + | 41945 | 0.67 | 0.536794 |
Target: 5'- uGCGCCaCUgaugauugUCGUCGCGCgUCuACUUCAg -3' miRNA: 3'- -UGCGGaGA--------AGCGGCGCG-AGcUGAAGU- -5' |
|||||||
24939 | 3' | -57.1 | NC_005284.1 | + | 44938 | 0.69 | 0.435703 |
Target: 5'- cGCGCCUCgguguaUCGCC-CGC-CGuGCUUCGg -3' miRNA: 3'- -UGCGGAGa-----AGCGGcGCGaGC-UGAAGU- -5' |
|||||||
24939 | 3' | -57.1 | NC_005284.1 | + | 45145 | 0.68 | 0.505449 |
Target: 5'- aGCGCgUa---GCCGCGCUCGcccgcccacGCUUCGa -3' miRNA: 3'- -UGCGgAgaagCGGCGCGAGC---------UGAAGU- -5' |
|||||||
24939 | 3' | -57.1 | NC_005284.1 | + | 45690 | 0.69 | 0.407552 |
Target: 5'- cACGCCUUcaCGaCCGCGCgUCGACa--- -3' miRNA: 3'- -UGCGGAGaaGC-GGCGCG-AGCUGaagu -5' |
|||||||
24939 | 3' | -57.1 | NC_005284.1 | + | 47736 | 0.67 | 0.547395 |
Target: 5'- aACGCCUgaacCUUCGCgCGuUGCUCGucgggcgacaGCUUCGc -3' miRNA: 3'- -UGCGGA----GAAGCG-GC-GCGAGC----------UGAAGU- -5' |
|||||||
24939 | 3' | -57.1 | NC_005284.1 | + | 49092 | 0.7 | 0.354805 |
Target: 5'- cCGCUcg-UCGCCGUGCUgucUGACUUCAc -3' miRNA: 3'- uGCGGagaAGCGGCGCGA---GCUGAAGU- -5' |
|||||||
24939 | 3' | -57.1 | NC_005284.1 | + | 53497 | 0.73 | 0.238692 |
Target: 5'- cCGCCggUUCGCCGCGCggGGCUUUu -3' miRNA: 3'- uGCGGagAAGCGGCGCGagCUGAAGu -5' |
|||||||
24939 | 3' | -57.1 | NC_005284.1 | + | 54747 | 0.74 | 0.198778 |
Target: 5'- cGCGCCgUCUUCGCCGCGU--GACagUCAc -3' miRNA: 3'- -UGCGG-AGAAGCGGCGCGagCUGa-AGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home