Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24939 | 3' | -57.1 | NC_005284.1 | + | 8582 | 0.68 | 0.495174 |
Target: 5'- uCGCCUaCUUCGCCauGCGCaucagggCGGCUUgAa -3' miRNA: 3'- uGCGGA-GAAGCGG--CGCGa------GCUGAAgU- -5' |
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24939 | 3' | -57.1 | NC_005284.1 | + | 37167 | 0.66 | 0.633907 |
Target: 5'- gACGCC-CUgaaucUCGCCgGCGCgUCGAUggCGg -3' miRNA: 3'- -UGCGGaGA-----AGCGG-CGCG-AGCUGaaGU- -5' |
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24939 | 3' | -57.1 | NC_005284.1 | + | 6163 | 0.66 | 0.623004 |
Target: 5'- -aGCaagCUCUUCGCCcCGCUCGGaagUUCGg -3' miRNA: 3'- ugCG---GAGAAGCGGcGCGAGCUg--AAGU- -5' |
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24939 | 3' | -57.1 | NC_005284.1 | + | 38166 | 0.66 | 0.612109 |
Target: 5'- uCGCgUCUUCGuCCGCGCgacgagccacaUCGGCa--- -3' miRNA: 3'- uGCGgAGAAGC-GGCGCG-----------AGCUGaagu -5' |
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24939 | 3' | -57.1 | NC_005284.1 | + | 11344 | 0.66 | 0.579561 |
Target: 5'- cCGCCcccCUUCGCCGCGCgagCcGCUg-- -3' miRNA: 3'- uGCGGa--GAAGCGGCGCGa--GcUGAagu -5' |
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24939 | 3' | -57.1 | NC_005284.1 | + | 47736 | 0.67 | 0.547395 |
Target: 5'- aACGCCUgaacCUUCGCgCGuUGCUCGucgggcgacaGCUUCGc -3' miRNA: 3'- -UGCGGA----GAAGCG-GC-GCGAGC----------UGAAGU- -5' |
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24939 | 3' | -57.1 | NC_005284.1 | + | 11868 | 0.67 | 0.536794 |
Target: 5'- cCGCCUCggcCGUguugaUGCGCUCGAUcUCGg -3' miRNA: 3'- uGCGGAGaa-GCG-----GCGCGAGCUGaAGU- -5' |
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24939 | 3' | -57.1 | NC_005284.1 | + | 15565 | 0.67 | 0.526265 |
Target: 5'- aACGCga---CGCCGCGCUCGGCg--- -3' miRNA: 3'- -UGCGgagaaGCGGCGCGAGCUGaagu -5' |
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24939 | 3' | -57.1 | NC_005284.1 | + | 15219 | 0.67 | 0.526265 |
Target: 5'- aGCGCacguauaUC-UCGCCGCuCUCGGuCUUCAc -3' miRNA: 3'- -UGCGg------AGaAGCGGCGcGAGCU-GAAGU- -5' |
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24939 | 3' | -57.1 | NC_005284.1 | + | 54747 | 0.74 | 0.198778 |
Target: 5'- cGCGCCgUCUUCGCCGCGU--GACagUCAc -3' miRNA: 3'- -UGCGG-AGAAGCGGCGCGagCUGa-AGU- -5' |
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24939 | 3' | -57.1 | NC_005284.1 | + | 10196 | 0.74 | 0.22082 |
Target: 5'- uGCGCCg--UCGCCGCGCUuucggucgcCGuCUUCAg -3' miRNA: 3'- -UGCGGagaAGCGGCGCGA---------GCuGAAGU- -5' |
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24939 | 3' | -57.1 | NC_005284.1 | + | 9827 | 0.69 | 0.445333 |
Target: 5'- uCGCCUCgacCGcCCGCGCUuCGgcaaGCUUCGc -3' miRNA: 3'- uGCGGAGaa-GC-GGCGCGA-GC----UGAAGU- -5' |
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24939 | 3' | -57.1 | NC_005284.1 | + | 10717 | 0.69 | 0.435703 |
Target: 5'- cGCGCagcgCUUCGCCGCcGCUCGuCg--- -3' miRNA: 3'- -UGCGga--GAAGCGGCG-CGAGCuGaagu -5' |
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24939 | 3' | -57.1 | NC_005284.1 | + | 10979 | 0.71 | 0.338325 |
Target: 5'- cGCGCC-CUUCGuCCGCGCUuCGuACUg-- -3' miRNA: 3'- -UGCGGaGAAGC-GGCGCGA-GC-UGAagu -5' |
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24939 | 3' | -57.1 | NC_005284.1 | + | 45145 | 0.68 | 0.505449 |
Target: 5'- aGCGCgUa---GCCGCGCUCGcccgcccacGCUUCGa -3' miRNA: 3'- -UGCGgAgaagCGGCGCGAGC---------UGAAGU- -5' |
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24939 | 3' | -57.1 | NC_005284.1 | + | 4422 | 0.69 | 0.407552 |
Target: 5'- aGCGCCUUcUCGCCG-GCg-GAUUUCAc -3' miRNA: 3'- -UGCGGAGaAGCGGCgCGagCUGAAGU- -5' |
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24939 | 3' | -57.1 | NC_005284.1 | + | 49092 | 0.7 | 0.354805 |
Target: 5'- cCGCUcg-UCGCCGUGCUgucUGACUUCAc -3' miRNA: 3'- uGCGGagaAGCGGCGCGA---GCUGAAGU- -5' |
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24939 | 3' | -57.1 | NC_005284.1 | + | 44938 | 0.69 | 0.435703 |
Target: 5'- cGCGCCUCgguguaUCGCC-CGC-CGuGCUUCGg -3' miRNA: 3'- -UGCGGAGa-----AGCGGcGCGaGC-UGAAGU- -5' |
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24939 | 3' | -57.1 | NC_005284.1 | + | 53497 | 0.73 | 0.238692 |
Target: 5'- cCGCCggUUCGCCGCGCggGGCUUUu -3' miRNA: 3'- uGCGGagAAGCGGCGCGagCUGAAGu -5' |
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24939 | 3' | -57.1 | NC_005284.1 | + | 30129 | 0.66 | 0.612109 |
Target: 5'- cACGUCgaCUgcaCGCCGCGCgCGACUg-- -3' miRNA: 3'- -UGCGGa-GAa--GCGGCGCGaGCUGAagu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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