miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24939 5' -49.8 NC_005284.1 + 53291 0.66 0.935908
Target:  5'- --aAACUGcUUGAGCGgCGGuuGUAGUUCa -3'
miRNA:   3'- aaaUUGACcAGCUCGC-GCU--UAUCGAG- -5'
24939 5' -49.8 NC_005284.1 + 45067 0.66 0.924116
Target:  5'- --gGGCgGG-CGAGCGCGGcUAcgcGCUCg -3'
miRNA:   3'- aaaUUGaCCaGCUCGCGCUuAU---CGAG- -5'
24939 5' -49.8 NC_005284.1 + 11814 0.66 0.911084
Target:  5'- --gAGCaGGUCGcGCGCGAGcgcGGCUa -3'
miRNA:   3'- aaaUUGaCCAGCuCGCGCUUa--UCGAg -5'
24939 5' -49.8 NC_005284.1 + 48815 0.67 0.904105
Target:  5'- --cGACUGGUUGccCGuCGAcgcGUGGCUCg -3'
miRNA:   3'- aaaUUGACCAGCucGC-GCU---UAUCGAG- -5'
24939 5' -49.8 NC_005284.1 + 38681 0.67 0.873199
Target:  5'- ------gGGUCGAcGCgGCGAAaGGCUCg -3'
miRNA:   3'- aaauugaCCAGCU-CG-CGCUUaUCGAG- -5'
24939 5' -49.8 NC_005284.1 + 19909 0.68 0.856036
Target:  5'- ---uGCgGGUgGGGUGCGAugGUGGUUCa -3'
miRNA:   3'- aaauUGaCCAgCUCGCGCU--UAUCGAG- -5'
24939 5' -49.8 NC_005284.1 + 16025 0.68 0.856036
Target:  5'- ------cGGUCGGGCGCGAcgAGaUCc -3'
miRNA:   3'- aaauugaCCAGCUCGCGCUuaUCgAG- -5'
24939 5' -49.8 NC_005284.1 + 51694 0.68 0.828344
Target:  5'- --aGACa-GUCGAGCGCGA--GGUUCg -3'
miRNA:   3'- aaaUUGacCAGCUCGCGCUuaUCGAG- -5'
24939 5' -49.8 NC_005284.1 + 23584 0.69 0.805685
Target:  5'- --gAGCgGGUCGAGCgguucaucgacgcgGCGggUuuuGCUCa -3'
miRNA:   3'- aaaUUGaCCAGCUCG--------------CGCuuAu--CGAG- -5'
24939 5' -49.8 NC_005284.1 + 9360 0.7 0.756191
Target:  5'- --cGACgGGcgCGAGCGCGA--GGCUUg -3'
miRNA:   3'- aaaUUGaCCa-GCUCGCGCUuaUCGAG- -5'
24939 5' -49.8 NC_005284.1 + 36098 0.71 0.66548
Target:  5'- ------cGGUgCGGGCGCGAGcAGCUCc -3'
miRNA:   3'- aaauugaCCA-GCUCGCGCUUaUCGAG- -5'
24939 5' -49.8 NC_005284.1 + 26704 1.07 0.004112
Target:  5'- cUUUAACUGGUCGAGCGCGAAUAGCUCc -3'
miRNA:   3'- -AAAUUGACCAGCUCGCGCUUAUCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.