Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24941 | 3' | -55.6 | NC_005284.1 | + | 50162 | 0.66 | 0.70709 |
Target: 5'- cUCG-AUGCUGuucGGCUGCUCGCu--- -3' miRNA: 3'- cAGCuUACGACu--UCGGCGAGCGcgcu -5' |
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24941 | 3' | -55.6 | NC_005284.1 | + | 16042 | 0.66 | 0.70709 |
Target: 5'- cGUUGAAcacgGCgaacgUGAGGCCgGCgUCGCGCGc -3' miRNA: 3'- -CAGCUUa---CG-----ACUUCGG-CG-AGCGCGCu -5' |
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24941 | 3' | -55.6 | NC_005284.1 | + | 17992 | 0.66 | 0.69625 |
Target: 5'- uGUCGA--GCgUGAuccuuucgccAGCCGCU-GCGCGGa -3' miRNA: 3'- -CAGCUuaCG-ACU----------UCGGCGAgCGCGCU- -5' |
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24941 | 3' | -55.6 | NC_005284.1 | + | 17695 | 0.66 | 0.685347 |
Target: 5'- cGUCGGAUcGUUGuAGCUGacgaGCGCGAc -3' miRNA: 3'- -CAGCUUA-CGACuUCGGCgag-CGCGCU- -5' |
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24941 | 3' | -55.6 | NC_005284.1 | + | 35563 | 0.66 | 0.685347 |
Target: 5'- cUCGAAggGUUGcgagcaAAGCUGCUCgcaccGCGCGAg -3' miRNA: 3'- cAGCUUa-CGAC------UUCGGCGAG-----CGCGCU- -5' |
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24941 | 3' | -55.6 | NC_005284.1 | + | 22859 | 0.66 | 0.674393 |
Target: 5'- -cCGGAUggucGUUGAGGCUGacgaUCGCGCGc -3' miRNA: 3'- caGCUUA----CGACUUCGGCg---AGCGCGCu -5' |
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24941 | 3' | -55.6 | NC_005284.1 | + | 38958 | 0.66 | 0.663398 |
Target: 5'- cGUCGAccuucgugcgcgAUGCUGAuccgcgGGCUGCgCGCugGCGAc -3' miRNA: 3'- -CAGCU------------UACGACU------UCGGCGaGCG--CGCU- -5' |
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24941 | 3' | -55.6 | NC_005284.1 | + | 11265 | 0.67 | 0.634701 |
Target: 5'- cGUCGAagGCUugcuuuccgcgcgcgGcGGCCGCg-GCGCGAg -3' miRNA: 3'- -CAGCUuaCGA---------------CuUCGGCGagCGCGCU- -5' |
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24941 | 3' | -55.6 | NC_005284.1 | + | 9232 | 0.67 | 0.630281 |
Target: 5'- cGUCGAGgcGCUGAcGCgCGCggCGgGCGGc -3' miRNA: 3'- -CAGCUUa-CGACUuCG-GCGa-GCgCGCU- -5' |
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24941 | 3' | -55.6 | NC_005284.1 | + | 21402 | 0.67 | 0.629175 |
Target: 5'- gGUCGAGUGCUGccgggucucgugaAAcGCCGCgcuacugaaCGCGCa- -3' miRNA: 3'- -CAGCUUACGAC-------------UU-CGGCGa--------GCGCGcu -5' |
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24941 | 3' | -55.6 | NC_005284.1 | + | 10132 | 0.67 | 0.608193 |
Target: 5'- -gCGAcgGCgcaGAcGgCGCUCGCGCGu -3' miRNA: 3'- caGCUuaCGa--CUuCgGCGAGCGCGCu -5' |
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24941 | 3' | -55.6 | NC_005284.1 | + | 8975 | 0.67 | 0.586189 |
Target: 5'- cGUCGA--GCgGuuGCCGUggucgCGCGCGAu -3' miRNA: 3'- -CAGCUuaCGaCuuCGGCGa----GCGCGCU- -5' |
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24941 | 3' | -55.6 | NC_005284.1 | + | 11776 | 0.67 | 0.586189 |
Target: 5'- cGUCGAcgGC-GAAacucGUCGCUCaCGCGAu -3' miRNA: 3'- -CAGCUuaCGaCUU----CGGCGAGcGCGCU- -5' |
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24941 | 3' | -55.6 | NC_005284.1 | + | 49718 | 0.68 | 0.57524 |
Target: 5'- aUCGAAccGUcgGAAcGCCGCUgaCGCGCGAu -3' miRNA: 3'- cAGCUUa-CGa-CUU-CGGCGA--GCGCGCU- -5' |
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24941 | 3' | -55.6 | NC_005284.1 | + | 35636 | 0.68 | 0.573056 |
Target: 5'- cUCGAAUGCguacugcgucagGuucacgauGCCGUUCGCGCGc -3' miRNA: 3'- cAGCUUACGa-----------Cuu------CGGCGAGCGCGCu -5' |
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24941 | 3' | -55.6 | NC_005284.1 | + | 25767 | 0.68 | 0.563252 |
Target: 5'- -cUGGcUGCUgcacgcaGAGGCUugGCUCGCGCGAa -3' miRNA: 3'- caGCUuACGA-------CUUCGG--CGAGCGCGCU- -5' |
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24941 | 3' | -55.6 | NC_005284.1 | + | 46473 | 0.68 | 0.553493 |
Target: 5'- cGUCcGAcGCUGGcguuAGCUGCUCGUGCa- -3' miRNA: 3'- -CAGcUUaCGACU----UCGGCGAGCGCGcu -5' |
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24941 | 3' | -55.6 | NC_005284.1 | + | 19100 | 0.68 | 0.542709 |
Target: 5'- cUCGAAucUGCUGAAcGCCGCg-GUGCa- -3' miRNA: 3'- cAGCUU--ACGACUU-CGGCGagCGCGcu -5' |
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24941 | 3' | -55.6 | NC_005284.1 | + | 15885 | 0.68 | 0.542709 |
Target: 5'- cGUCGAccGCaGAGGCgGUgCGCGCGc -3' miRNA: 3'- -CAGCUuaCGaCUUCGgCGaGCGCGCu -5' |
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24941 | 3' | -55.6 | NC_005284.1 | + | 51743 | 0.69 | 0.500346 |
Target: 5'- -gCGAAaGCUGAucGUCGCgcgCGCGUGAu -3' miRNA: 3'- caGCUUaCGACUu-CGGCGa--GCGCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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