miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24941 3' -55.6 NC_005284.1 + 3248 0.69 0.479715
Target:  5'- -aCGGucccUGCUGAGGCCGggagaGCGCGAu -3'
miRNA:   3'- caGCUu---ACGACUUCGGCgag--CGCGCU- -5'
24941 3' -55.6 NC_005284.1 + 8975 0.67 0.586189
Target:  5'- cGUCGA--GCgGuuGCCGUggucgCGCGCGAu -3'
miRNA:   3'- -CAGCUuaCGaCuuCGGCGa----GCGCGCU- -5'
24941 3' -55.6 NC_005284.1 + 9232 0.67 0.630281
Target:  5'- cGUCGAGgcGCUGAcGCgCGCggCGgGCGGc -3'
miRNA:   3'- -CAGCUUa-CGACUuCG-GCGa-GCgCGCU- -5'
24941 3' -55.6 NC_005284.1 + 9715 0.7 0.439763
Target:  5'- cUCGGccugcGCUGAAgccuccGCCGCUUGCGCGu -3'
miRNA:   3'- cAGCUua---CGACUU------CGGCGAGCGCGCu -5'
24941 3' -55.6 NC_005284.1 + 9899 0.69 0.469556
Target:  5'- cUCGAGcGCgccGAAGCguCGCUCGCGCu- -3'
miRNA:   3'- cAGCUUaCGa--CUUCG--GCGAGCGCGcu -5'
24941 3' -55.6 NC_005284.1 + 10132 0.67 0.608193
Target:  5'- -gCGAcgGCgcaGAcGgCGCUCGCGCGu -3'
miRNA:   3'- caGCUuaCGa--CUuCgGCGAGCGCGCu -5'
24941 3' -55.6 NC_005284.1 + 11148 0.74 0.274975
Target:  5'- uUCGGcuucaAUGCUGAcgcagcucgcgccgcGGCCGCcgCGCGCGGa -3'
miRNA:   3'- cAGCU-----UACGACU---------------UCGGCGa-GCGCGCU- -5'
24941 3' -55.6 NC_005284.1 + 11248 0.7 0.449576
Target:  5'- uGUCGAccaacGCgGcAGCgGCUCGCGCGGc -3'
miRNA:   3'- -CAGCUua---CGaCuUCGgCGAGCGCGCU- -5'
24941 3' -55.6 NC_005284.1 + 11265 0.67 0.634701
Target:  5'- cGUCGAagGCUugcuuuccgcgcgcgGcGGCCGCg-GCGCGAg -3'
miRNA:   3'- -CAGCUuaCGA---------------CuUCGGCGagCGCGCU- -5'
24941 3' -55.6 NC_005284.1 + 11776 0.67 0.586189
Target:  5'- cGUCGAcgGC-GAAacucGUCGCUCaCGCGAu -3'
miRNA:   3'- -CAGCUuaCGaCUU----CGGCGAGcGCGCU- -5'
24941 3' -55.6 NC_005284.1 + 11911 0.69 0.48998
Target:  5'- -gCGAGccgcUGCUcGAgauAGCCGCgcucgCGCGCGAc -3'
miRNA:   3'- caGCUU----ACGA-CU---UCGGCGa----GCGCGCU- -5'
24941 3' -55.6 NC_005284.1 + 15885 0.68 0.542709
Target:  5'- cGUCGAccGCaGAGGCgGUgCGCGCGc -3'
miRNA:   3'- -CAGCUuaCGaCUUCGgCGaGCGCGCu -5'
24941 3' -55.6 NC_005284.1 + 16042 0.66 0.70709
Target:  5'- cGUUGAAcacgGCgaacgUGAGGCCgGCgUCGCGCGc -3'
miRNA:   3'- -CAGCUUa---CG-----ACUUCGG-CG-AGCGCGCu -5'
24941 3' -55.6 NC_005284.1 + 17695 0.66 0.685347
Target:  5'- cGUCGGAUcGUUGuAGCUGacgaGCGCGAc -3'
miRNA:   3'- -CAGCUUA-CGACuUCGGCgag-CGCGCU- -5'
24941 3' -55.6 NC_005284.1 + 17992 0.66 0.69625
Target:  5'- uGUCGA--GCgUGAuccuuucgccAGCCGCU-GCGCGGa -3'
miRNA:   3'- -CAGCUuaCG-ACU----------UCGGCGAgCGCGCU- -5'
24941 3' -55.6 NC_005284.1 + 19100 0.68 0.542709
Target:  5'- cUCGAAucUGCUGAAcGCCGCg-GUGCa- -3'
miRNA:   3'- cAGCUU--ACGACUU-CGGCGagCGCGcu -5'
24941 3' -55.6 NC_005284.1 + 21402 0.67 0.629175
Target:  5'- gGUCGAGUGCUGccgggucucgugaAAcGCCGCgcuacugaaCGCGCa- -3'
miRNA:   3'- -CAGCUUACGAC-------------UU-CGGCGa--------GCGCGcu -5'
24941 3' -55.6 NC_005284.1 + 22859 0.66 0.674393
Target:  5'- -cCGGAUggucGUUGAGGCUGacgaUCGCGCGc -3'
miRNA:   3'- caGCUUA----CGACUUCGGCg---AGCGCGCu -5'
24941 3' -55.6 NC_005284.1 + 25665 0.72 0.340548
Target:  5'- --aGGcgGCgc-AGCCGUUCGCGCGAg -3'
miRNA:   3'- cagCUuaCGacuUCGGCGAGCGCGCU- -5'
24941 3' -55.6 NC_005284.1 + 25767 0.68 0.563252
Target:  5'- -cUGGcUGCUgcacgcaGAGGCUugGCUCGCGCGAa -3'
miRNA:   3'- caGCUuACGA-------CUUCGG--CGAGCGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.