miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24941 3' -55.6 NC_005284.1 + 11911 0.69 0.48998
Target:  5'- -gCGAGccgcUGCUcGAgauAGCCGCgcucgCGCGCGAc -3'
miRNA:   3'- caGCUU----ACGA-CU---UCGGCGa----GCGCGCU- -5'
24941 3' -55.6 NC_005284.1 + 9715 0.7 0.439763
Target:  5'- cUCGGccugcGCUGAAgccuccGCCGCUUGCGCGu -3'
miRNA:   3'- cAGCUua---CGACUU------CGGCGAGCGCGCu -5'
24941 3' -55.6 NC_005284.1 + 11776 0.67 0.586189
Target:  5'- cGUCGAcgGC-GAAacucGUCGCUCaCGCGAu -3'
miRNA:   3'- -CAGCUuaCGaCUU----CGGCGAGcGCGCU- -5'
24941 3' -55.6 NC_005284.1 + 11265 0.67 0.634701
Target:  5'- cGUCGAagGCUugcuuuccgcgcgcgGcGGCCGCg-GCGCGAg -3'
miRNA:   3'- -CAGCUuaCGA---------------CuUCGGCGagCGCGCU- -5'
24941 3' -55.6 NC_005284.1 + 22859 0.66 0.674393
Target:  5'- -cCGGAUggucGUUGAGGCUGacgaUCGCGCGc -3'
miRNA:   3'- caGCUUA----CGACUUCGGCg---AGCGCGCu -5'
24941 3' -55.6 NC_005284.1 + 17695 0.66 0.685347
Target:  5'- cGUCGGAUcGUUGuAGCUGacgaGCGCGAc -3'
miRNA:   3'- -CAGCUUA-CGACuUCGGCgag-CGCGCU- -5'
24941 3' -55.6 NC_005284.1 + 35563 0.66 0.685347
Target:  5'- cUCGAAggGUUGcgagcaAAGCUGCUCgcaccGCGCGAg -3'
miRNA:   3'- cAGCUUa-CGAC------UUCGGCGAG-----CGCGCU- -5'
24941 3' -55.6 NC_005284.1 + 17992 0.66 0.69625
Target:  5'- uGUCGA--GCgUGAuccuuucgccAGCCGCU-GCGCGGa -3'
miRNA:   3'- -CAGCUuaCG-ACU----------UCGGCGAgCGCGCU- -5'
24941 3' -55.6 NC_005284.1 + 50162 0.66 0.70709
Target:  5'- cUCG-AUGCUGuucGGCUGCUCGCu--- -3'
miRNA:   3'- cAGCuUACGACu--UCGGCGAGCGcgcu -5'
24941 3' -55.6 NC_005284.1 + 16042 0.66 0.70709
Target:  5'- cGUUGAAcacgGCgaacgUGAGGCCgGCgUCGCGCGc -3'
miRNA:   3'- -CAGCUUa---CG-----ACUUCGG-CG-AGCGCGCu -5'
24941 3' -55.6 NC_005284.1 + 36190 0.71 0.410141
Target:  5'- aUCGAgaagcagAUGaaGGAGCUGCUCGCGCc- -3'
miRNA:   3'- cAGCU-------UACgaCUUCGGCGAGCGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.