Results 21 - 31 of 31 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24941 | 3' | -55.6 | NC_005284.1 | + | 47282 | 0.71 | 0.39261 |
Target: 5'- aUCGAcgGCcGucGCCGCgugaucaacgCGCGCGAg -3' miRNA: 3'- cAGCUuaCGaCuuCGGCGa---------GCGCGCU- -5' |
|||||||
24941 | 3' | -55.6 | NC_005284.1 | + | 11248 | 0.7 | 0.449576 |
Target: 5'- uGUCGAccaacGCgGcAGCgGCUCGCGCGGc -3' miRNA: 3'- -CAGCUua---CGaCuUCGgCGAGCGCGCU- -5' |
|||||||
24941 | 3' | -55.6 | NC_005284.1 | + | 9899 | 0.69 | 0.469556 |
Target: 5'- cUCGAGcGCgccGAAGCguCGCUCGCGCu- -3' miRNA: 3'- cAGCUUaCGa--CUUCG--GCGAGCGCGcu -5' |
|||||||
24941 | 3' | -55.6 | NC_005284.1 | + | 3248 | 0.69 | 0.479715 |
Target: 5'- -aCGGucccUGCUGAGGCCGggagaGCGCGAu -3' miRNA: 3'- caGCUu---ACGACUUCGGCgag--CGCGCU- -5' |
|||||||
24941 | 3' | -55.6 | NC_005284.1 | + | 15885 | 0.68 | 0.542709 |
Target: 5'- cGUCGAccGCaGAGGCgGUgCGCGCGc -3' miRNA: 3'- -CAGCUuaCGaCUUCGgCGaGCGCGCu -5' |
|||||||
24941 | 3' | -55.6 | NC_005284.1 | + | 19100 | 0.68 | 0.542709 |
Target: 5'- cUCGAAucUGCUGAAcGCCGCg-GUGCa- -3' miRNA: 3'- cAGCUU--ACGACUU-CGGCGagCGCGcu -5' |
|||||||
24941 | 3' | -55.6 | NC_005284.1 | + | 46473 | 0.68 | 0.553493 |
Target: 5'- cGUCcGAcGCUGGcguuAGCUGCUCGUGCa- -3' miRNA: 3'- -CAGcUUaCGACU----UCGGCGAGCGCGcu -5' |
|||||||
24941 | 3' | -55.6 | NC_005284.1 | + | 35636 | 0.68 | 0.573056 |
Target: 5'- cUCGAAUGCguacugcgucagGuucacgauGCCGUUCGCGCGc -3' miRNA: 3'- cAGCUUACGa-----------Cuu------CGGCGAGCGCGCu -5' |
|||||||
24941 | 3' | -55.6 | NC_005284.1 | + | 10132 | 0.67 | 0.608193 |
Target: 5'- -gCGAcgGCgcaGAcGgCGCUCGCGCGu -3' miRNA: 3'- caGCUuaCGa--CUuCgGCGAGCGCGCu -5' |
|||||||
24941 | 3' | -55.6 | NC_005284.1 | + | 21402 | 0.67 | 0.629175 |
Target: 5'- gGUCGAGUGCUGccgggucucgugaAAcGCCGCgcuacugaaCGCGCa- -3' miRNA: 3'- -CAGCUUACGAC-------------UU-CGGCGa--------GCGCGcu -5' |
|||||||
24941 | 3' | -55.6 | NC_005284.1 | + | 27973 | 1.09 | 0.00088 |
Target: 5'- cGUCGAAUGCUGAAGCCGCUCGCGCGAu -3' miRNA: 3'- -CAGCUUACGACUUCGGCGAGCGCGCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home