miRNA display CGI


Results 1 - 20 of 31 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24941 5' -59.3 NC_005284.1 + 45281 0.66 0.519812
Target:  5'- cUCCgCGCGGcugcGCGGCAUGGcugaGUAGC-Cg -3'
miRNA:   3'- -AGG-GCGCC----CGCUGUACCaa--CGUCGcG- -5'
24941 5' -59.3 NC_005284.1 + 49310 0.66 0.519812
Target:  5'- uUCCCGaGGGUacGGCgAUGGUUgGCAcggcacgcguGCGCg -3'
miRNA:   3'- -AGGGCgCCCG--CUG-UACCAA-CGU----------CGCG- -5'
24941 5' -59.3 NC_005284.1 + 48898 0.66 0.519812
Target:  5'- gCCCGC-GGCGAa--GGUgucGCuGCGCc -3'
miRNA:   3'- aGGGCGcCCGCUguaCCAa--CGuCGCG- -5'
24941 5' -59.3 NC_005284.1 + 45016 0.66 0.509586
Target:  5'- -aCgGCGGGCGAUAcaccGaGgcGCGGUGCg -3'
miRNA:   3'- agGgCGCCCGCUGUa---C-CaaCGUCGCG- -5'
24941 5' -59.3 NC_005284.1 + 31543 0.66 0.509586
Target:  5'- uUCCgGCGgcacGGCGGuCAauUGGggGCccGGCGCg -3'
miRNA:   3'- -AGGgCGC----CCGCU-GU--ACCaaCG--UCGCG- -5'
24941 5' -59.3 NC_005284.1 + 45637 0.66 0.479439
Target:  5'- gUgCGCGGGCGACGcgccacgcGGcgGCauagAGCGCg -3'
miRNA:   3'- aGgGCGCCCGCUGUa-------CCaaCG----UCGCG- -5'
24941 5' -59.3 NC_005284.1 + 50495 0.66 0.469584
Target:  5'- uUCCCGUGGcGCGAU-UGGUUcgaGUGGCa- -3'
miRNA:   3'- -AGGGCGCC-CGCUGuACCAA---CGUCGcg -5'
24941 5' -59.3 NC_005284.1 + 9155 0.67 0.459834
Target:  5'- -aUCGCGcGCGGCAUGGgcaagaguuCGGCGCa -3'
miRNA:   3'- agGGCGCcCGCUGUACCaac------GUCGCG- -5'
24941 5' -59.3 NC_005284.1 + 27535 0.67 0.459834
Target:  5'- uUCCuCGCGGGguuCGGCuauUGGccGCGuGCGCu -3'
miRNA:   3'- -AGG-GCGCCC---GCUGu--ACCaaCGU-CGCG- -5'
24941 5' -59.3 NC_005284.1 + 19035 0.67 0.459834
Target:  5'- aUCgCCGaGGGCGAUAUGGcgGUcGCGa -3'
miRNA:   3'- -AG-GGCgCCCGCUGUACCaaCGuCGCg -5'
24941 5' -59.3 NC_005284.1 + 5514 0.67 0.440663
Target:  5'- gCCCGCGGGCGGuCAUuuuuUUGaCAGgGUg -3'
miRNA:   3'- aGGGCGCCCGCU-GUAcc--AAC-GUCgCG- -5'
24941 5' -59.3 NC_005284.1 + 14599 0.67 0.41278
Target:  5'- aCCCGCaGcGuCGGCgAUGGcUGCuGCGCg -3'
miRNA:   3'- aGGGCGcC-C-GCUG-UACCaACGuCGCG- -5'
24941 5' -59.3 NC_005284.1 + 10740 0.67 0.41278
Target:  5'- gCCCGCGGcGCG-CAccaGUUccucgcGCAGCGCu -3'
miRNA:   3'- aGGGCGCC-CGCuGUac-CAA------CGUCGCG- -5'
24941 5' -59.3 NC_005284.1 + 47791 0.67 0.41278
Target:  5'- gCUCGCGgaGGCGACG-GGcgagcgcuugGCGGCGCu -3'
miRNA:   3'- aGGGCGC--CCGCUGUaCCaa--------CGUCGCG- -5'
24941 5' -59.3 NC_005284.1 + 38470 0.68 0.394808
Target:  5'- gUCCCuuuGCGGGUG-CAUGaUUaCAGCGCu -3'
miRNA:   3'- -AGGG---CGCCCGCuGUACcAAcGUCGCG- -5'
24941 5' -59.3 NC_005284.1 + 23183 0.68 0.394808
Target:  5'- gUUCCGCucGUGugAUGGcUGCAGCuGCg -3'
miRNA:   3'- -AGGGCGccCGCugUACCaACGUCG-CG- -5'
24941 5' -59.3 NC_005284.1 + 37758 0.68 0.386014
Target:  5'- aUCCCGCGcGCGGCAagcgGGgaacUGCuGUGUg -3'
miRNA:   3'- -AGGGCGCcCGCUGUa---CCa---ACGuCGCG- -5'
24941 5' -59.3 NC_005284.1 + 33979 0.68 0.386014
Target:  5'- -gCUGCGGGCugcucGACAgGGggUGCGGCGa -3'
miRNA:   3'- agGGCGCCCG-----CUGUaCCa-ACGUCGCg -5'
24941 5' -59.3 NC_005284.1 + 21325 0.68 0.37735
Target:  5'- --aUGCGGGCGAC-UGGc-GgGGCGCg -3'
miRNA:   3'- aggGCGCCCGCUGuACCaaCgUCGCG- -5'
24941 5' -59.3 NC_005284.1 + 12898 0.68 0.368818
Target:  5'- gUCCGCGGGCG-CGaaGcgGCGGCGUc -3'
miRNA:   3'- aGGGCGCCCGCuGUacCaaCGUCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.