miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24941 5' -59.3 NC_005284.1 + 48898 0.66 0.519812
Target:  5'- gCCCGC-GGCGAa--GGUgucGCuGCGCc -3'
miRNA:   3'- aGGGCGcCCGCUguaCCAa--CGuCGCG- -5'
24941 5' -59.3 NC_005284.1 + 23183 0.68 0.394808
Target:  5'- gUUCCGCucGUGugAUGGcUGCAGCuGCg -3'
miRNA:   3'- -AGGGCGccCGCugUACCaACGUCG-CG- -5'
24941 5' -59.3 NC_005284.1 + 38470 0.68 0.394808
Target:  5'- gUCCCuuuGCGGGUG-CAUGaUUaCAGCGCu -3'
miRNA:   3'- -AGGG---CGCCCGCuGUACcAAcGUCGCG- -5'
24941 5' -59.3 NC_005284.1 + 47791 0.67 0.41278
Target:  5'- gCUCGCGgaGGCGACG-GGcgagcgcuugGCGGCGCu -3'
miRNA:   3'- aGGGCGC--CCGCUGUaCCaa--------CGUCGCG- -5'
24941 5' -59.3 NC_005284.1 + 5514 0.67 0.440663
Target:  5'- gCCCGCGGGCGGuCAUuuuuUUGaCAGgGUg -3'
miRNA:   3'- aGGGCGCCCGCU-GUAcc--AAC-GUCgCG- -5'
24941 5' -59.3 NC_005284.1 + 9155 0.67 0.459834
Target:  5'- -aUCGCGcGCGGCAUGGgcaagaguuCGGCGCa -3'
miRNA:   3'- agGGCGCcCGCUGUACCaac------GUCGCG- -5'
24941 5' -59.3 NC_005284.1 + 27535 0.67 0.459834
Target:  5'- uUCCuCGCGGGguuCGGCuauUGGccGCGuGCGCu -3'
miRNA:   3'- -AGG-GCGCCC---GCUGu--ACCaaCGU-CGCG- -5'
24941 5' -59.3 NC_005284.1 + 19035 0.67 0.459834
Target:  5'- aUCgCCGaGGGCGAUAUGGcgGUcGCGa -3'
miRNA:   3'- -AG-GGCgCCCGCUGUACCaaCGuCGCg -5'
24941 5' -59.3 NC_005284.1 + 49310 0.66 0.519812
Target:  5'- uUCCCGaGGGUacGGCgAUGGUUgGCAcggcacgcguGCGCg -3'
miRNA:   3'- -AGGGCgCCCG--CUG-UACCAA-CGU----------CGCG- -5'
24941 5' -59.3 NC_005284.1 + 37758 0.68 0.386014
Target:  5'- aUCCCGCGcGCGGCAagcgGGgaacUGCuGUGUg -3'
miRNA:   3'- -AGGGCGCcCGCUGUa---CCa---ACGuCGCG- -5'
24941 5' -59.3 NC_005284.1 + 33979 0.68 0.386014
Target:  5'- -gCUGCGGGCugcucGACAgGGggUGCGGCGa -3'
miRNA:   3'- agGGCGCCCG-----CUGUaCCa-ACGUCGCg -5'
24941 5' -59.3 NC_005284.1 + 21325 0.68 0.37735
Target:  5'- --aUGCGGGCGAC-UGGc-GgGGCGCg -3'
miRNA:   3'- aggGCGCCCGCUGuACCaaCgUCGCG- -5'
24941 5' -59.3 NC_005284.1 + 31426 0.82 0.040122
Target:  5'- gUUCGCGGGCGACGUGcGccgcUGCGGCGCg -3'
miRNA:   3'- aGGGCGCCCGCUGUAC-Ca---ACGUCGCG- -5'
24941 5' -59.3 NC_005284.1 + 11268 0.7 0.270231
Target:  5'- gCUCGCGcGGCGAag-GGggGCGGUGUu -3'
miRNA:   3'- aGGGCGC-CCGCUguaCCaaCGUCGCG- -5'
24941 5' -59.3 NC_005284.1 + 49256 0.7 0.276999
Target:  5'- aUCCCGCGcgaucaggaGGCGACGUGacga-AGCGCg -3'
miRNA:   3'- -AGGGCGC---------CCGCUGUACcaacgUCGCG- -5'
24941 5' -59.3 NC_005284.1 + 8653 0.7 0.29094
Target:  5'- -aCgGCGGGCGcACAgcGGaUGCGGCGUu -3'
miRNA:   3'- agGgCGCCCGC-UGUa-CCaACGUCGCG- -5'
24941 5' -59.3 NC_005284.1 + 12362 0.7 0.29094
Target:  5'- uUCgCCGCGGGUgGGCucguUGGcgGgAGCGCg -3'
miRNA:   3'- -AG-GGCGCCCG-CUGu---ACCaaCgUCGCG- -5'
24941 5' -59.3 NC_005284.1 + 19536 0.69 0.320454
Target:  5'- -aUCGCgGGGCGGCAgGGUUgGCGGUGg -3'
miRNA:   3'- agGGCG-CCCGCUGUaCCAA-CGUCGCg -5'
24941 5' -59.3 NC_005284.1 + 38907 0.69 0.328174
Target:  5'- gCCCgcaggGCGGGCGGguUGGUuagGCGGCu- -3'
miRNA:   3'- aGGG-----CGCCCGCUguACCAa--CGUCGcg -5'
24941 5' -59.3 NC_005284.1 + 18981 0.68 0.359586
Target:  5'- aUCUaCGCGGGCGACGaaaggcucaaugcUGGcgUGUGGuCGCu -3'
miRNA:   3'- -AGG-GCGCCCGCUGU-------------ACCa-ACGUC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.