Results 21 - 31 of 31 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24941 | 5' | -59.3 | NC_005284.1 | + | 18981 | 0.68 | 0.359586 |
Target: 5'- aUCUaCGCGGGCGACGaaaggcucaaugcUGGcgUGUGGuCGCu -3' miRNA: 3'- -AGG-GCGCCCGCUGU-------------ACCa-ACGUC-GCG- -5' |
|||||||
24941 | 5' | -59.3 | NC_005284.1 | + | 21325 | 0.68 | 0.37735 |
Target: 5'- --aUGCGGGCGAC-UGGc-GgGGCGCg -3' miRNA: 3'- aggGCGCCCGCUGuACCaaCgUCGCG- -5' |
|||||||
24941 | 5' | -59.3 | NC_005284.1 | + | 11251 | 0.69 | 0.328174 |
Target: 5'- uUUCCGCGcGCGGC--GGccGCGGCGCg -3' miRNA: 3'- -AGGGCGCcCGCUGuaCCaaCGUCGCG- -5' |
|||||||
24941 | 5' | -59.3 | NC_005284.1 | + | 12898 | 0.68 | 0.368818 |
Target: 5'- gUCCGCGGGCG-CGaaGcgGCGGCGUc -3' miRNA: 3'- aGGGCGCCCGCuGUacCaaCGUCGCG- -5' |
|||||||
24941 | 5' | -59.3 | NC_005284.1 | + | 14599 | 0.67 | 0.41278 |
Target: 5'- aCCCGCaGcGuCGGCgAUGGcUGCuGCGCg -3' miRNA: 3'- aGGGCGcC-C-GCUG-UACCaACGuCGCG- -5' |
|||||||
24941 | 5' | -59.3 | NC_005284.1 | + | 10740 | 0.67 | 0.41278 |
Target: 5'- gCCCGCGGcGCG-CAccaGUUccucgcGCAGCGCu -3' miRNA: 3'- aGGGCGCC-CGCuGUac-CAA------CGUCGCG- -5' |
|||||||
24941 | 5' | -59.3 | NC_005284.1 | + | 50495 | 0.66 | 0.469584 |
Target: 5'- uUCCCGUGGcGCGAU-UGGUUcgaGUGGCa- -3' miRNA: 3'- -AGGGCGCC-CGCUGuACCAA---CGUCGcg -5' |
|||||||
24941 | 5' | -59.3 | NC_005284.1 | + | 45637 | 0.66 | 0.479439 |
Target: 5'- gUgCGCGGGCGACGcgccacgcGGcgGCauagAGCGCg -3' miRNA: 3'- aGgGCGCCCGCUGUa-------CCaaCG----UCGCG- -5' |
|||||||
24941 | 5' | -59.3 | NC_005284.1 | + | 45016 | 0.66 | 0.509586 |
Target: 5'- -aCgGCGGGCGAUAcaccGaGgcGCGGUGCg -3' miRNA: 3'- agGgCGCCCGCUGUa---C-CaaCGUCGCG- -5' |
|||||||
24941 | 5' | -59.3 | NC_005284.1 | + | 31543 | 0.66 | 0.509586 |
Target: 5'- uUCCgGCGgcacGGCGGuCAauUGGggGCccGGCGCg -3' miRNA: 3'- -AGGgCGC----CCGCU-GU--ACCaaCG--UCGCG- -5' |
|||||||
24941 | 5' | -59.3 | NC_005284.1 | + | 5577 | 0.81 | 0.048839 |
Target: 5'- gCCCGCGGGCGGCcaccauUGGUUGCAGaaccccgaucagcCGCc -3' miRNA: 3'- aGGGCGCCCGCUGu-----ACCAACGUC-------------GCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home