miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24941 5' -59.3 NC_005284.1 + 31543 0.66 0.509586
Target:  5'- uUCCgGCGgcacGGCGGuCAauUGGggGCccGGCGCg -3'
miRNA:   3'- -AGGgCGC----CCGCU-GU--ACCaaCG--UCGCG- -5'
24941 5' -59.3 NC_005284.1 + 10740 0.67 0.41278
Target:  5'- gCCCGCGGcGCG-CAccaGUUccucgcGCAGCGCu -3'
miRNA:   3'- aGGGCGCC-CGCuGUac-CAA------CGUCGCG- -5'
24941 5' -59.3 NC_005284.1 + 12898 0.68 0.368818
Target:  5'- gUCCGCGGGCG-CGaaGcgGCGGCGUc -3'
miRNA:   3'- aGGGCGCCCGCuGUacCaaCGUCGCG- -5'
24941 5' -59.3 NC_005284.1 + 50495 0.66 0.469584
Target:  5'- uUCCCGUGGcGCGAU-UGGUUcgaGUGGCa- -3'
miRNA:   3'- -AGGGCGCC-CGCUGuACCAA---CGUCGcg -5'
24941 5' -59.3 NC_005284.1 + 14599 0.67 0.41278
Target:  5'- aCCCGCaGcGuCGGCgAUGGcUGCuGCGCg -3'
miRNA:   3'- aGGGCGcC-C-GCUG-UACCaACGuCGCG- -5'
24941 5' -59.3 NC_005284.1 + 11251 0.69 0.328174
Target:  5'- uUUCCGCGcGCGGC--GGccGCGGCGCg -3'
miRNA:   3'- -AGGGCGCcCGCUGuaCCaaCGUCGCG- -5'
24941 5' -59.3 NC_005284.1 + 5577 0.81 0.048839
Target:  5'- gCCCGCGGGCGGCcaccauUGGUUGCAGaaccccgaucagcCGCc -3'
miRNA:   3'- aGGGCGCCCGCUGu-----ACCAACGUC-------------GCG- -5'
24941 5' -59.3 NC_005284.1 + 45637 0.66 0.479439
Target:  5'- gUgCGCGGGCGACGcgccacgcGGcgGCauagAGCGCg -3'
miRNA:   3'- aGgGCGCCCGCUGUa-------CCaaCG----UCGCG- -5'
24941 5' -59.3 NC_005284.1 + 45016 0.66 0.509586
Target:  5'- -aCgGCGGGCGAUAcaccGaGgcGCGGUGCg -3'
miRNA:   3'- agGgCGCCCGCUGUa---C-CaaCGUCGCG- -5'
24941 5' -59.3 NC_005284.1 + 49310 0.66 0.519812
Target:  5'- uUCCCGaGGGUacGGCgAUGGUUgGCAcggcacgcguGCGCg -3'
miRNA:   3'- -AGGGCgCCCG--CUG-UACCAA-CGU----------CGCG- -5'
24941 5' -59.3 NC_005284.1 + 47791 0.67 0.41278
Target:  5'- gCUCGCGgaGGCGACG-GGcgagcgcuugGCGGCGCu -3'
miRNA:   3'- aGGGCGC--CCGCUGUaCCaa--------CGUCGCG- -5'
24941 5' -59.3 NC_005284.1 + 38470 0.68 0.394808
Target:  5'- gUCCCuuuGCGGGUG-CAUGaUUaCAGCGCu -3'
miRNA:   3'- -AGGG---CGCCCGCuGUACcAAcGUCGCG- -5'
24941 5' -59.3 NC_005284.1 + 23183 0.68 0.394808
Target:  5'- gUUCCGCucGUGugAUGGcUGCAGCuGCg -3'
miRNA:   3'- -AGGGCGccCGCugUACCaACGUCG-CG- -5'
24941 5' -59.3 NC_005284.1 + 37758 0.68 0.386014
Target:  5'- aUCCCGCGcGCGGCAagcgGGgaacUGCuGUGUg -3'
miRNA:   3'- -AGGGCGCcCGCUGUa---CCa---ACGuCGCG- -5'
24941 5' -59.3 NC_005284.1 + 33979 0.68 0.386014
Target:  5'- -gCUGCGGGCugcucGACAgGGggUGCGGCGa -3'
miRNA:   3'- agGGCGCCCG-----CUGUaCCa-ACGUCGCg -5'
24941 5' -59.3 NC_005284.1 + 21325 0.68 0.37735
Target:  5'- --aUGCGGGCGAC-UGGc-GgGGCGCg -3'
miRNA:   3'- aggGCGCCCGCUGuACCaaCgUCGCG- -5'
24941 5' -59.3 NC_005284.1 + 19536 0.69 0.320454
Target:  5'- -aUCGCgGGGCGGCAgGGUUgGCGGUGg -3'
miRNA:   3'- agGGCG-CCCGCUGUaCCAA-CGUCGCg -5'
24941 5' -59.3 NC_005284.1 + 12362 0.7 0.29094
Target:  5'- uUCgCCGCGGGUgGGCucguUGGcgGgAGCGCg -3'
miRNA:   3'- -AG-GGCGCCCG-CUGu---ACCaaCgUCGCG- -5'
24941 5' -59.3 NC_005284.1 + 8653 0.7 0.29094
Target:  5'- -aCgGCGGGCGcACAgcGGaUGCGGCGUu -3'
miRNA:   3'- agGgCGCCCGC-UGUa-CCaACGUCGCG- -5'
24941 5' -59.3 NC_005284.1 + 11268 0.7 0.270231
Target:  5'- gCUCGCGcGGCGAag-GGggGCGGUGUu -3'
miRNA:   3'- aGGGCGC-CCGCUguaCCaaCGUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.