miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24942 3' -46.5 NC_005284.1 + 28744 0.66 0.994466
Target:  5'- aCACCCGGAAggGGAAGAuGUaCGCuGCGa -3'
miRNA:   3'- -GUGGGUUUUuaCUUUUU-CGgGCG-UGC- -5'
24942 3' -46.5 NC_005284.1 + 20832 0.66 0.994466
Target:  5'- gCAUCCAcuccucgcaGAAAUGAAAAAG-CCGCccaaagGCGg -3'
miRNA:   3'- -GUGGGU---------UUUUACUUUUUCgGGCG------UGC- -5'
24942 3' -46.5 NC_005284.1 + 24714 0.66 0.994466
Target:  5'- uCGCCgAAGGGcGAAAcgacGCCCGUGCGu -3'
miRNA:   3'- -GUGGgUUUUUaCUUUuu--CGGGCGUGC- -5'
24942 3' -46.5 NC_005284.1 + 20581 0.66 0.99348
Target:  5'- aCAUCCu----UGAGAuAAGCgCCGUACGg -3'
miRNA:   3'- -GUGGGuuuuuACUUU-UUCG-GGCGUGC- -5'
24942 3' -46.5 NC_005284.1 + 14889 0.66 0.99348
Target:  5'- aACCCG---GUGAGcGAuCCCGCGCu -3'
miRNA:   3'- gUGGGUuuuUACUUuUUcGGGCGUGc -5'
24942 3' -46.5 NC_005284.1 + 16160 0.66 0.992358
Target:  5'- gCGCCgAGAAucGUGuuGAAGAGCCCcccGCGCu -3'
miRNA:   3'- -GUGGgUUUU--UAC--UUUUUCGGG---CGUGc -5'
24942 3' -46.5 NC_005284.1 + 12261 0.66 0.992238
Target:  5'- cCGCCCGucgcGAGAUGAAAgccguaggcguucGAGCCgacagcCGCGCu -3'
miRNA:   3'- -GUGGGU----UUUUACUUU-------------UUCGG------GCGUGc -5'
24942 3' -46.5 NC_005284.1 + 8433 0.66 0.991088
Target:  5'- uGCC--GAGAUGGuccggcGAGCCCGCgACGg -3'
miRNA:   3'- gUGGguUUUUACUuu----UUCGGGCG-UGC- -5'
24942 3' -46.5 NC_005284.1 + 31472 0.66 0.991088
Target:  5'- aGCCCAuGAAGUGGAAccGCgaCgGCGCGu -3'
miRNA:   3'- gUGGGU-UUUUACUUUuuCG--GgCGUGC- -5'
24942 3' -46.5 NC_005284.1 + 10802 0.67 0.986261
Target:  5'- gCAUCCAuuGcgGcGAGuGCCUGCGCGc -3'
miRNA:   3'- -GUGGGUuuUuaCuUUUuCGGGCGUGC- -5'
24942 3' -46.5 NC_005284.1 + 36724 0.67 0.986261
Target:  5'- aGCCCAuguacUGggGGAGCuuGC-CGu -3'
miRNA:   3'- gUGGGUuuuu-ACuuUUUCGggCGuGC- -5'
24942 3' -46.5 NC_005284.1 + 697 0.67 0.984271
Target:  5'- gAUCCGGAGGcGGccgagcGAAAGCUCGCACu -3'
miRNA:   3'- gUGGGUUUUUaCU------UUUUCGGGCGUGc -5'
24942 3' -46.5 NC_005284.1 + 40792 0.67 0.984271
Target:  5'- gCACUUgu-GAUGAAGGAGCagacuCCGCACa -3'
miRNA:   3'- -GUGGGuuuUUACUUUUUCG-----GGCGUGc -5'
24942 3' -46.5 NC_005284.1 + 26613 0.67 0.979644
Target:  5'- cCGCCCAAAAcgGGAGcGGCgCG-GCGa -3'
miRNA:   3'- -GUGGGUUUUuaCUUUuUCGgGCgUGC- -5'
24942 3' -46.5 NC_005284.1 + 18844 0.67 0.979644
Target:  5'- gCGCCCAGAAAUaAAAcaccuGCCCGacCGCGa -3'
miRNA:   3'- -GUGGGUUUUUAcUUUuu---CGGGC--GUGC- -5'
24942 3' -46.5 NC_005284.1 + 2110 0.67 0.979644
Target:  5'- gUugCCGucguGAUGGAAucGGCCCGC-CGu -3'
miRNA:   3'- -GugGGUuu--UUACUUUu-UCGGGCGuGC- -5'
24942 3' -46.5 NC_005284.1 + 2951 0.68 0.974075
Target:  5'- aACCCAuucc-GAAAGAcGCUCGCGCu -3'
miRNA:   3'- gUGGGUuuuuaCUUUUU-CGGGCGUGc -5'
24942 3' -46.5 NC_005284.1 + 37744 0.68 0.970908
Target:  5'- uUAUCCGAGAG-GAAAu--CCCGCGCGc -3'
miRNA:   3'- -GUGGGUUUUUaCUUUuucGGGCGUGC- -5'
24942 3' -46.5 NC_005284.1 + 10921 0.68 0.970908
Target:  5'- gGCgCGAAuGAUGcgcAGGCCCGCAUGg -3'
miRNA:   3'- gUGgGUUU-UUACuuuUUCGGGCGUGC- -5'
24942 3' -46.5 NC_005284.1 + 1997 0.68 0.970908
Target:  5'- gACCCA---AUGAAGGAGCuuGagGCGg -3'
miRNA:   3'- gUGGGUuuuUACUUUUUCGggCg-UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.