Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24942 | 5' | -45.9 | NC_005284.1 | + | 14288 | 0.66 | 0.991402 |
Target: 5'- -aCGCGGUCAAGcggauUGCCgAAUUg--- -3' miRNA: 3'- gaGCGCUAGUUCu----ACGGgUUAAauaa -5' |
|||||||
24942 | 5' | -45.9 | NC_005284.1 | + | 13420 | 0.66 | 0.994722 |
Target: 5'- cCUUGUGcuuggCAAGAUGCCCGGc----- -3' miRNA: 3'- -GAGCGCua---GUUCUACGGGUUaaauaa -5' |
|||||||
24942 | 5' | -45.9 | NC_005284.1 | + | 1722 | 0.69 | 0.950968 |
Target: 5'- -cCGCGAUUcuGGGUGCCCGAa----- -3' miRNA: 3'- gaGCGCUAGu-UCUACGGGUUaaauaa -5' |
|||||||
24942 | 5' | -45.9 | NC_005284.1 | + | 22600 | 0.7 | 0.945996 |
Target: 5'- uCUCGCGAaugcguacaUCGAGcgGCUCGAUUg--- -3' miRNA: 3'- -GAGCGCU---------AGUUCuaCGGGUUAAauaa -5' |
|||||||
24942 | 5' | -45.9 | NC_005284.1 | + | 47956 | 0.71 | 0.922876 |
Target: 5'- -gCGCGGUUGAGGUGCUCGAa----- -3' miRNA: 3'- gaGCGCUAGUUCUACGGGUUaaauaa -5' |
|||||||
24942 | 5' | -45.9 | NC_005284.1 | + | 28156 | 1.07 | 0.0104 |
Target: 5'- cCUCGCGAUCAAGAUGCCCAAUUUAUUa -3' miRNA: 3'- -GAGCGCUAGUUCUACGGGUUAAAUAA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home