miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24943 3' -60.1 NC_005284.1 + 15937 0.66 0.491546
Target:  5'- gGCGUUc-CUG-ACGUCgGCGCGCGACg -3'
miRNA:   3'- -UGCAGcuGACgUGCGG-CGCGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 54767 0.66 0.490552
Target:  5'- cACGUCaccgcaaccGCUcGCGCGCCGUcuucgccGCGUGACa -3'
miRNA:   3'- -UGCAGc--------UGA-CGUGCGGCG-------CGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 46484 0.66 0.490552
Target:  5'- gGCGUUaGCUGCucgugcauggccgACGCCGCaCGgGACg -3'
miRNA:   3'- -UGCAGcUGACG-------------UGCGGCGcGCgCUGa -5'
24943 3' -60.1 NC_005284.1 + 10751 0.66 0.481652
Target:  5'- gUGUCGAUcGCGC-CCGCGgCGCGcACc -3'
miRNA:   3'- uGCAGCUGaCGUGcGGCGC-GCGC-UGa -5'
24943 3' -60.1 NC_005284.1 + 41031 0.66 0.471856
Target:  5'- gACGUucaCGcauACUGCGCGCCGacguuucuCGCGgGGCg -3'
miRNA:   3'- -UGCA---GC---UGACGUGCGGC--------GCGCgCUGa -5'
24943 3' -60.1 NC_005284.1 + 14237 0.66 0.468936
Target:  5'- cCGUCGguguGCUGUugGCCGgGUugcuugagacggauGCGGCg -3'
miRNA:   3'- uGCAGC----UGACGugCGGCgCG--------------CGCUGa -5'
24943 3' -60.1 NC_005284.1 + 33769 0.66 0.462161
Target:  5'- cUGUCGAa-GUGCGCCG-GCGcCGACUu -3'
miRNA:   3'- uGCAGCUgaCGUGCGGCgCGC-GCUGA- -5'
24943 3' -60.1 NC_005284.1 + 49712 0.66 0.452572
Target:  5'- cCGUCGGaacGC-CGCUGaCGCGCGAUc -3'
miRNA:   3'- uGCAGCUga-CGuGCGGC-GCGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 31418 0.66 0.452572
Target:  5'- aGCG-CGuguuCUGCGCGUCGCuCGcCGACg -3'
miRNA:   3'- -UGCaGCu---GACGUGCGGCGcGC-GCUGa -5'
24943 3' -60.1 NC_005284.1 + 15573 0.66 0.452572
Target:  5'- -aGUCGGgUaacGCgACGCCGCGCuCGGCg -3'
miRNA:   3'- ugCAGCUgA---CG-UGCGGCGCGcGCUGa -5'
24943 3' -60.1 NC_005284.1 + 17891 0.66 0.452572
Target:  5'- --aUCGGCggGCGCauCCGCGCaGCGGCUg -3'
miRNA:   3'- ugcAGCUGa-CGUGc-GGCGCG-CGCUGA- -5'
24943 3' -60.1 NC_005284.1 + 9586 0.66 0.443093
Target:  5'- aGCGcagggCGAUcGCGCuGCCGCG-GCGGCg -3'
miRNA:   3'- -UGCa----GCUGaCGUG-CGGCGCgCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 51348 0.66 0.443093
Target:  5'- cCGuUCGAa-GCACGUucuuCGCGCGUGGCUc -3'
miRNA:   3'- uGC-AGCUgaCGUGCG----GCGCGCGCUGA- -5'
24943 3' -60.1 NC_005284.1 + 10385 0.66 0.440271
Target:  5'- -aG-CGGCUGCgcacgaagcaagagGCGUCGCGgGCGGCc -3'
miRNA:   3'- ugCaGCUGACG--------------UGCGGCGCgCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 14500 0.67 0.433726
Target:  5'- gACGUCGACUGCAUGUguccaUGgaaGCGCaGCa -3'
miRNA:   3'- -UGCAGCUGACGUGCG-----GCg--CGCGcUGa -5'
24943 3' -60.1 NC_005284.1 + 15347 0.67 0.424476
Target:  5'- -gGUCGGCUGUgccgauGCGCCGgGaUGCGAa- -3'
miRNA:   3'- ugCAGCUGACG------UGCGGCgC-GCGCUga -5'
24943 3' -60.1 NC_005284.1 + 39687 0.67 0.424476
Target:  5'- uGC-UCGACaaGCGCGCCGCGagGCaGACg -3'
miRNA:   3'- -UGcAGCUGa-CGUGCGGCGCg-CG-CUGa -5'
24943 3' -60.1 NC_005284.1 + 47565 0.67 0.424476
Target:  5'- uGC-UCGACUGCugcaugGCgGUGCGUGACg -3'
miRNA:   3'- -UGcAGCUGACGug----CGgCGCGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 21777 0.67 0.415345
Target:  5'- -aG-CGGCUGCGCGUCGCuGUcCGACa -3'
miRNA:   3'- ugCaGCUGACGUGCGGCG-CGcGCUGa -5'
24943 3' -60.1 NC_005284.1 + 11801 0.67 0.415345
Target:  5'- cACGgccgaGGCggaGCAgGUCGCGCGCGAg- -3'
miRNA:   3'- -UGCag---CUGa--CGUgCGGCGCGCGCUga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.