Results 81 - 89 of 89 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 24943 | 3' | -60.1 | NC_005284.1 | + | 8802 | 0.73 | 0.172699 |
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Target: 5'- cGCGgaUCGaACUGCGCGCCGCgucgaGCGCGcGCa -3' miRNA: 3'- -UGC--AGC-UGACGUGCGGCG-----CGCGC-UGa -5' |
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| 24943 | 3' | -60.1 | NC_005284.1 | + | 51644 | 0.73 | 0.159568 |
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Target: 5'- uGC-UCGGCUGUAUGUgaaucacgCGCGCGCGACg -3' miRNA: 3'- -UGcAGCUGACGUGCG--------GCGCGCGCUGa -5' |
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| 24943 | 3' | -60.1 | NC_005284.1 | + | 35153 | 0.73 | 0.177287 |
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Target: 5'- -gGUCGGCuccguUGUAUGCCGUGUGCGAUc -3' miRNA: 3'- ugCAGCUG-----ACGUGCGGCGCGCGCUGa -5' |
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| 24943 | 3' | -60.1 | NC_005284.1 | + | 21607 | 0.73 | 0.181508 |
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Target: 5'- aGCGUUGGgcaagauCUcGCGCGCCGCGCuCGACg -3' miRNA: 3'- -UGCAGCU-------GA-CGUGCGGCGCGcGCUGa -5' |
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| 24943 | 3' | -60.1 | NC_005284.1 | + | 8877 | 0.75 | 0.125425 |
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Target: 5'- aACGaCGuGCUGCGCaUCGCGCGCGACa -3' miRNA: 3'- -UGCaGC-UGACGUGcGGCGCGCGCUGa -5' |
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| 24943 | 3' | -60.1 | NC_005284.1 | + | 37194 | 0.77 | 0.0955 |
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Target: 5'- gGCGUCuacCUGCGCGCgauCGUGCGCGACg -3' miRNA: 3'- -UGCAGcu-GACGUGCG---GCGCGCGCUGa -5' |
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| 24943 | 3' | -60.1 | NC_005284.1 | + | 15450 | 0.78 | 0.072419 |
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Target: 5'- gGCGUgcaCGACUGCuACGCgauCGUGCGCGACUg -3' miRNA: 3'- -UGCA---GCUGACG-UGCG---GCGCGCGCUGA- -5' |
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| 24943 | 3' | -60.1 | NC_005284.1 | + | 17722 | 0.79 | 0.068494 |
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Target: 5'- gGCGuUCGGCUGCACGUCGCagGCGCaGGCg -3' miRNA: 3'- -UGC-AGCUGACGUGCGGCG--CGCG-CUGa -5' |
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| 24943 | 3' | -60.1 | NC_005284.1 | + | 30129 | 1.07 | 0.000492 |
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Target: 5'- cACGUCGACUGCACGCCGCGCGCGACUg -3' miRNA: 3'- -UGCAGCUGACGUGCGGCGCGCGCUGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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