miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24943 3' -60.1 NC_005284.1 + 6531 0.71 0.229378
Target:  5'- -aGUCGACgaagGCGCuCagGCGCGCGACa -3'
miRNA:   3'- ugCAGCUGa---CGUGcGg-CGCGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 21718 0.71 0.235245
Target:  5'- cGCGgCGAUcGCACGCUGCucggcgucgaGCGCGGCg -3'
miRNA:   3'- -UGCaGCUGaCGUGCGGCG----------CGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 14384 0.71 0.235245
Target:  5'- -gGUCGACUGCACGgaaauCgGCGC-CGACa -3'
miRNA:   3'- ugCAGCUGACGUGC-----GgCGCGcGCUGa -5'
24943 3' -60.1 NC_005284.1 + 15729 0.71 0.235245
Target:  5'- cUGUCGAC-GCGCGCgGUGUGgGGCg -3'
miRNA:   3'- uGCAGCUGaCGUGCGgCGCGCgCUGa -5'
24943 3' -60.1 NC_005284.1 + 8616 0.71 0.239426
Target:  5'- uCGUCGACgGCcggcucguauuucaAUGCgGUGCGCGACg -3'
miRNA:   3'- uGCAGCUGaCG--------------UGCGgCGCGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 10660 0.71 0.247356
Target:  5'- cGCGagGAacuggUGCGCGCCGCggGCGCGAUc -3'
miRNA:   3'- -UGCagCUg----ACGUGCGGCG--CGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 11266 0.71 0.247356
Target:  5'- uCGUCGAaggcUUGCuuuCCGCGCGCGGCg -3'
miRNA:   3'- uGCAGCU----GACGugcGGCGCGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 18911 0.7 0.253602
Target:  5'- -aGUCGGCgcuugGCACggaGCUGCGCGCGcCg -3'
miRNA:   3'- ugCAGCUGa----CGUG---CGGCGCGCGCuGa -5'
24943 3' -60.1 NC_005284.1 + 16775 0.7 0.253602
Target:  5'- cGCGUCgGACgucagcgGCACGCCGaCGC-CGGCc -3'
miRNA:   3'- -UGCAG-CUGa------CGUGCGGC-GCGcGCUGa -5'
24943 3' -60.1 NC_005284.1 + 40803 0.7 0.266484
Target:  5'- aGCGU--ACUGCugGCC-CGCGCGAg- -3'
miRNA:   3'- -UGCAgcUGACGugCGGcGCGCGCUga -5'
24943 3' -60.1 NC_005284.1 + 43870 0.7 0.27312
Target:  5'- cCGUUGAUgauccGCGCGUCGUGUGCGAa- -3'
miRNA:   3'- uGCAGCUGa----CGUGCGGCGCGCGCUga -5'
24943 3' -60.1 NC_005284.1 + 49472 0.7 0.27312
Target:  5'- --uUCGGCUGCuuGCC-CGUGCGGCg -3'
miRNA:   3'- ugcAGCUGACGugCGGcGCGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 18180 0.7 0.27312
Target:  5'- aACG-CGAuaCUGCuGCGCCGCGagcuCGCGGCUu -3'
miRNA:   3'- -UGCaGCU--GACG-UGCGGCGC----GCGCUGA- -5'
24943 3' -60.1 NC_005284.1 + 13995 0.7 0.279889
Target:  5'- gGCG-CGGCUGCGCgguaaGCgGgGCGUGACg -3'
miRNA:   3'- -UGCaGCUGACGUG-----CGgCgCGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 20944 0.7 0.279889
Target:  5'- aGC-UCG-CUGCACGCCGCGUGa-ACUg -3'
miRNA:   3'- -UGcAGCuGACGUGCGGCGCGCgcUGA- -5'
24943 3' -60.1 NC_005284.1 + 36866 0.7 0.289589
Target:  5'- cGCcUCGGCUGCACGCaguucguucuccuucUGCuGCGCGAUc -3'
miRNA:   3'- -UGcAGCUGACGUGCG---------------GCG-CGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 4122 0.69 0.293826
Target:  5'- cCGgaagCGAUgGCAaucCGCCGUGCGCGAUg -3'
miRNA:   3'- uGCa---GCUGaCGU---GCGGCGCGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 11172 0.69 0.293826
Target:  5'- cGCGcCG-CgGC-CGCCGCGCGCGGa- -3'
miRNA:   3'- -UGCaGCuGaCGuGCGGCGCGCGCUga -5'
24943 3' -60.1 NC_005284.1 + 17077 0.69 0.300994
Target:  5'- cGCGUCGGCgauCGuCGCCGUGUGCG-Cg -3'
miRNA:   3'- -UGCAGCUGac-GU-GCGGCGCGCGCuGa -5'
24943 3' -60.1 NC_005284.1 + 14593 0.69 0.308297
Target:  5'- aGCGUCGGCgaugGC-UGCUGCGCGuCGGa- -3'
miRNA:   3'- -UGCAGCUGa---CGuGCGGCGCGC-GCUga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.