miRNA display CGI


Results 41 - 60 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24943 3' -60.1 NC_005284.1 + 27540 0.69 0.315735
Target:  5'- cGCGggguUCGGCUaUugGCCGCGUGCG-CUg -3'
miRNA:   3'- -UGC----AGCUGAcGugCGGCGCGCGCuGA- -5'
24943 3' -60.1 NC_005284.1 + 21366 0.69 0.323307
Target:  5'- cCGUUGuGCUGC-CGCaguagGCGCGCGGCc -3'
miRNA:   3'- uGCAGC-UGACGuGCGg----CGCGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 11914 0.69 0.323307
Target:  5'- aACG-CGagccGCUGCucgagauagccGCGCuCGCGCGCGACc -3'
miRNA:   3'- -UGCaGC----UGACG-----------UGCG-GCGCGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 18477 0.69 0.329461
Target:  5'- cGCG-CGGgUGCGCGCCGagaacgcgcucgGCGUGACg -3'
miRNA:   3'- -UGCaGCUgACGUGCGGCg-----------CGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 48830 0.69 0.331013
Target:  5'- uCG-CGGC-GCACGCCGCGCGgguUGAUg -3'
miRNA:   3'- uGCaGCUGaCGUGCGGCGCGC---GCUGa -5'
24943 3' -60.1 NC_005284.1 + 25668 0.69 0.331013
Target:  5'- uCGUCGAaacagucgGCAacCGCCGCGCG-GACg -3'
miRNA:   3'- uGCAGCUga------CGU--GCGGCGCGCgCUGa -5'
24943 3' -60.1 NC_005284.1 + 9913 0.68 0.338854
Target:  5'- aGCGUCG-CU-CGCGCuCGCGCagcaGCGGCg -3'
miRNA:   3'- -UGCAGCuGAcGUGCG-GCGCG----CGCUGa -5'
24943 3' -60.1 NC_005284.1 + 31429 0.68 0.338854
Target:  5'- cGCGggCGAC-GUGCGCCGC-UGCGGCg -3'
miRNA:   3'- -UGCa-GCUGaCGUGCGGCGcGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 15422 0.68 0.338854
Target:  5'- --aUCGGcCUGCACGCCGa--GCGACa -3'
miRNA:   3'- ugcAGCU-GACGUGCGGCgcgCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 21755 0.68 0.338854
Target:  5'- -gGUCGACgGCGgccacCGCCGaCGCgGCGGCa -3'
miRNA:   3'- ugCAGCUGaCGU-----GCGGC-GCG-CGCUGa -5'
24943 3' -60.1 NC_005284.1 + 45652 0.68 0.346026
Target:  5'- gGCGUCGAUagccgagUGCGCGggcgaCGCGCcacGCGGCg -3'
miRNA:   3'- -UGCAGCUG-------ACGUGCg----GCGCG---CGCUGa -5'
24943 3' -60.1 NC_005284.1 + 32796 0.68 0.346829
Target:  5'- uGCGUCGGcCUGCGCggGuuGCGgGgCGGCg -3'
miRNA:   3'- -UGCAGCU-GACGUG--CggCGCgC-GCUGa -5'
24943 3' -60.1 NC_005284.1 + 15884 0.68 0.346829
Target:  5'- uCGUCGACcGCagagGCGgUGCGCGCG-CUa -3'
miRNA:   3'- uGCAGCUGaCG----UGCgGCGCGCGCuGA- -5'
24943 3' -60.1 NC_005284.1 + 35365 0.68 0.346829
Target:  5'- cGCGUCGACUGUAgCGCaugGaCGC-CGACa -3'
miRNA:   3'- -UGCAGCUGACGU-GCGg--C-GCGcGCUGa -5'
24943 3' -60.1 NC_005284.1 + 48418 0.68 0.354121
Target:  5'- -aGUUGGCUGCGaagacgcgccaauCGCCGCGUGCa--- -3'
miRNA:   3'- ugCAGCUGACGU-------------GCGGCGCGCGcuga -5'
24943 3' -60.1 NC_005284.1 + 16692 0.68 0.354938
Target:  5'- gGCGUCGGCgUGC-CGCUGaCGUcCGACg -3'
miRNA:   3'- -UGCAGCUG-ACGuGCGGC-GCGcGCUGa -5'
24943 3' -60.1 NC_005284.1 + 33964 0.68 0.354938
Target:  5'- uCGUCGGCcgGCGCuGCUGCGgGCuGCUc -3'
miRNA:   3'- uGCAGCUGa-CGUG-CGGCGCgCGcUGA- -5'
24943 3' -60.1 NC_005284.1 + 38957 0.68 0.358218
Target:  5'- uCGUCGACcuucgUGCGCgaugcugauccgcggGCUGCGCGCuGGCg -3'
miRNA:   3'- uGCAGCUG-----ACGUG---------------CGGCGCGCG-CUGa -5'
24943 3' -60.1 NC_005284.1 + 21558 0.68 0.363179
Target:  5'- uUGcCGACgaGCAgGCCGCGCG-GGCg -3'
miRNA:   3'- uGCaGCUGa-CGUgCGGCGCGCgCUGa -5'
24943 3' -60.1 NC_005284.1 + 33559 0.68 0.363179
Target:  5'- uAUGUCGGCaGCAgCGCCGgccgacgGCGCGugUa -3'
miRNA:   3'- -UGCAGCUGaCGU-GCGGCg------CGCGCugA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.