Results 61 - 80 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24943 | 3' | -60.1 | NC_005284.1 | + | 7540 | 0.68 | 0.370709 |
Target: 5'- aACGaCGAagggcaaaacauuCUGCGUGCCGCGCguGCGACg -3' miRNA: 3'- -UGCaGCU-------------GACGUGCGGCGCG--CGCUGa -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 53686 | 0.68 | 0.380055 |
Target: 5'- uCGUCGACggGCACGgCaaGUGCGCuGGCg -3' miRNA: 3'- uGCAGCUGa-CGUGCgG--CGCGCG-CUGa -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 21646 | 0.67 | 0.388688 |
Target: 5'- cGCGUCGA----ACGCC-CGCGCGGCc -3' miRNA: 3'- -UGCAGCUgacgUGCGGcGCGCGCUGa -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 37108 | 0.67 | 0.397448 |
Target: 5'- gGCGUCG-C-GCACGaUCGCGCGCagguaGACg -3' miRNA: 3'- -UGCAGCuGaCGUGC-GGCGCGCG-----CUGa -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 9327 | 0.67 | 0.406335 |
Target: 5'- aGCGUaucCGuGCcGCcCGCCGCGCGCGuCa -3' miRNA: 3'- -UGCA---GC-UGaCGuGCGGCGCGCGCuGa -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 956 | 0.67 | 0.406335 |
Target: 5'- gUGcCGAggUGUACGCCG-GCGCGACg -3' miRNA: 3'- uGCaGCUg-ACGUGCGGCgCGCGCUGa -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 30409 | 0.67 | 0.406335 |
Target: 5'- cAUGUCGAUcGUcCG-CGUGCGCGACg -3' miRNA: 3'- -UGCAGCUGaCGuGCgGCGCGCGCUGa -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 9997 | 0.67 | 0.415345 |
Target: 5'- uACGcCGcuGCUGCGCGagCGCGaGCGACg -3' miRNA: 3'- -UGCaGC--UGACGUGCg-GCGCgCGCUGa -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 43366 | 0.67 | 0.415345 |
Target: 5'- -aGUCGAUacaGCAgGCCGUcCGCGACc -3' miRNA: 3'- ugCAGCUGa--CGUgCGGCGcGCGCUGa -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 11801 | 0.67 | 0.415345 |
Target: 5'- cACGgccgaGGCggaGCAgGUCGCGCGCGAg- -3' miRNA: 3'- -UGCag---CUGa--CGUgCGGCGCGCGCUga -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 21777 | 0.67 | 0.415345 |
Target: 5'- -aG-CGGCUGCGCGUCGCuGUcCGACa -3' miRNA: 3'- ugCaGCUGACGUGCGGCG-CGcGCUGa -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 15347 | 0.67 | 0.424476 |
Target: 5'- -gGUCGGCUGUgccgauGCGCCGgGaUGCGAa- -3' miRNA: 3'- ugCAGCUGACG------UGCGGCgC-GCGCUga -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 47565 | 0.67 | 0.424476 |
Target: 5'- uGC-UCGACUGCugcaugGCgGUGCGUGACg -3' miRNA: 3'- -UGcAGCUGACGug----CGgCGCGCGCUGa -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 39687 | 0.67 | 0.424476 |
Target: 5'- uGC-UCGACaaGCGCGCCGCGagGCaGACg -3' miRNA: 3'- -UGcAGCUGa-CGUGCGGCGCg-CG-CUGa -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 14500 | 0.67 | 0.433726 |
Target: 5'- gACGUCGACUGCAUGUguccaUGgaaGCGCaGCa -3' miRNA: 3'- -UGCAGCUGACGUGCG-----GCg--CGCGcUGa -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 10385 | 0.66 | 0.440271 |
Target: 5'- -aG-CGGCUGCgcacgaagcaagagGCGUCGCGgGCGGCc -3' miRNA: 3'- ugCaGCUGACG--------------UGCGGCGCgCGCUGa -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 9586 | 0.66 | 0.443093 |
Target: 5'- aGCGcagggCGAUcGCGCuGCCGCG-GCGGCg -3' miRNA: 3'- -UGCa----GCUGaCGUG-CGGCGCgCGCUGa -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 51348 | 0.66 | 0.443093 |
Target: 5'- cCGuUCGAa-GCACGUucuuCGCGCGUGGCUc -3' miRNA: 3'- uGC-AGCUgaCGUGCG----GCGCGCGCUGA- -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 49712 | 0.66 | 0.452572 |
Target: 5'- cCGUCGGaacGC-CGCUGaCGCGCGAUc -3' miRNA: 3'- uGCAGCUga-CGuGCGGC-GCGCGCUGa -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 15573 | 0.66 | 0.452572 |
Target: 5'- -aGUCGGgUaacGCgACGCCGCGCuCGGCg -3' miRNA: 3'- ugCAGCUgA---CG-UGCGGCGCGcGCUGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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