Results 81 - 89 of 89 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 24943 | 3' | -60.1 | NC_005284.1 | + | 49712 | 0.66 | 0.452572 |
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Target: 5'- cCGUCGGaacGC-CGCUGaCGCGCGAUc -3' miRNA: 3'- uGCAGCUga-CGuGCGGC-GCGCGCUGa -5' |
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| 24943 | 3' | -60.1 | NC_005284.1 | + | 17891 | 0.66 | 0.452572 |
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Target: 5'- --aUCGGCggGCGCauCCGCGCaGCGGCUg -3' miRNA: 3'- ugcAGCUGa-CGUGc-GGCGCG-CGCUGA- -5' |
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| 24943 | 3' | -60.1 | NC_005284.1 | + | 33769 | 0.66 | 0.462161 |
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Target: 5'- cUGUCGAa-GUGCGCCG-GCGcCGACUu -3' miRNA: 3'- uGCAGCUgaCGUGCGGCgCGC-GCUGA- -5' |
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| 24943 | 3' | -60.1 | NC_005284.1 | + | 14237 | 0.66 | 0.468936 |
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Target: 5'- cCGUCGguguGCUGUugGCCGgGUugcuugagacggauGCGGCg -3' miRNA: 3'- uGCAGC----UGACGugCGGCgCG--------------CGCUGa -5' |
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| 24943 | 3' | -60.1 | NC_005284.1 | + | 41031 | 0.66 | 0.471856 |
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Target: 5'- gACGUucaCGcauACUGCGCGCCGacguuucuCGCGgGGCg -3' miRNA: 3'- -UGCA---GC---UGACGUGCGGC--------GCGCgCUGa -5' |
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| 24943 | 3' | -60.1 | NC_005284.1 | + | 10751 | 0.66 | 0.481652 |
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Target: 5'- gUGUCGAUcGCGC-CCGCGgCGCGcACc -3' miRNA: 3'- uGCAGCUGaCGUGcGGCGC-GCGC-UGa -5' |
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| 24943 | 3' | -60.1 | NC_005284.1 | + | 54767 | 0.66 | 0.490552 |
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Target: 5'- cACGUCaccgcaaccGCUcGCGCGCCGUcuucgccGCGUGACa -3' miRNA: 3'- -UGCAGc--------UGA-CGUGCGGCG-------CGCGCUGa -5' |
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| 24943 | 3' | -60.1 | NC_005284.1 | + | 46484 | 0.66 | 0.490552 |
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Target: 5'- gGCGUUaGCUGCucgugcauggccgACGCCGCaCGgGACg -3' miRNA: 3'- -UGCAGcUGACG-------------UGCGGCGcGCgCUGa -5' |
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| 24943 | 3' | -60.1 | NC_005284.1 | + | 15937 | 0.66 | 0.491546 |
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Target: 5'- gGCGUUc-CUG-ACGUCgGCGCGCGACg -3' miRNA: 3'- -UGCAGcuGACgUGCGG-CGCGCGCUGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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