miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24943 3' -60.1 NC_005284.1 + 9997 0.67 0.415345
Target:  5'- uACGcCGcuGCUGCGCGagCGCGaGCGACg -3'
miRNA:   3'- -UGCaGC--UGACGUGCg-GCGCgCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 11801 0.67 0.415345
Target:  5'- cACGgccgaGGCggaGCAgGUCGCGCGCGAg- -3'
miRNA:   3'- -UGCag---CUGa--CGUgCGGCGCGCGCUga -5'
24943 3' -60.1 NC_005284.1 + 9327 0.67 0.406335
Target:  5'- aGCGUaucCGuGCcGCcCGCCGCGCGCGuCa -3'
miRNA:   3'- -UGCA---GC-UGaCGuGCGGCGCGCGCuGa -5'
24943 3' -60.1 NC_005284.1 + 30409 0.67 0.406335
Target:  5'- cAUGUCGAUcGUcCG-CGUGCGCGACg -3'
miRNA:   3'- -UGCAGCUGaCGuGCgGCGCGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 956 0.67 0.406335
Target:  5'- gUGcCGAggUGUACGCCG-GCGCGACg -3'
miRNA:   3'- uGCaGCUg-ACGUGCGGCgCGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 37108 0.67 0.397448
Target:  5'- gGCGUCG-C-GCACGaUCGCGCGCagguaGACg -3'
miRNA:   3'- -UGCAGCuGaCGUGC-GGCGCGCG-----CUGa -5'
24943 3' -60.1 NC_005284.1 + 21646 0.67 0.388688
Target:  5'- cGCGUCGA----ACGCC-CGCGCGGCc -3'
miRNA:   3'- -UGCAGCUgacgUGCGGcGCGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 53686 0.68 0.380055
Target:  5'- uCGUCGACggGCACGgCaaGUGCGCuGGCg -3'
miRNA:   3'- uGCAGCUGa-CGUGCgG--CGCGCG-CUGa -5'
24943 3' -60.1 NC_005284.1 + 7540 0.68 0.370709
Target:  5'- aACGaCGAagggcaaaacauuCUGCGUGCCGCGCguGCGACg -3'
miRNA:   3'- -UGCaGCU-------------GACGUGCGGCGCG--CGCUGa -5'
24943 3' -60.1 NC_005284.1 + 21558 0.68 0.363179
Target:  5'- uUGcCGACgaGCAgGCCGCGCG-GGCg -3'
miRNA:   3'- uGCaGCUGa-CGUgCGGCGCGCgCUGa -5'
24943 3' -60.1 NC_005284.1 + 33559 0.68 0.363179
Target:  5'- uAUGUCGGCaGCAgCGCCGgccgacgGCGCGugUa -3'
miRNA:   3'- -UGCAGCUGaCGU-GCGGCg------CGCGCugA- -5'
24943 3' -60.1 NC_005284.1 + 38957 0.68 0.358218
Target:  5'- uCGUCGACcuucgUGCGCgaugcugauccgcggGCUGCGCGCuGGCg -3'
miRNA:   3'- uGCAGCUG-----ACGUG---------------CGGCGCGCG-CUGa -5'
24943 3' -60.1 NC_005284.1 + 33964 0.68 0.354938
Target:  5'- uCGUCGGCcgGCGCuGCUGCGgGCuGCUc -3'
miRNA:   3'- uGCAGCUGa-CGUG-CGGCGCgCGcUGA- -5'
24943 3' -60.1 NC_005284.1 + 16692 0.68 0.354938
Target:  5'- gGCGUCGGCgUGC-CGCUGaCGUcCGACg -3'
miRNA:   3'- -UGCAGCUG-ACGuGCGGC-GCGcGCUGa -5'
24943 3' -60.1 NC_005284.1 + 48418 0.68 0.354121
Target:  5'- -aGUUGGCUGCGaagacgcgccaauCGCCGCGUGCa--- -3'
miRNA:   3'- ugCAGCUGACGU-------------GCGGCGCGCGcuga -5'
24943 3' -60.1 NC_005284.1 + 15884 0.68 0.346829
Target:  5'- uCGUCGACcGCagagGCGgUGCGCGCG-CUa -3'
miRNA:   3'- uGCAGCUGaCG----UGCgGCGCGCGCuGA- -5'
24943 3' -60.1 NC_005284.1 + 32796 0.68 0.346829
Target:  5'- uGCGUCGGcCUGCGCggGuuGCGgGgCGGCg -3'
miRNA:   3'- -UGCAGCU-GACGUG--CggCGCgC-GCUGa -5'
24943 3' -60.1 NC_005284.1 + 35365 0.68 0.346829
Target:  5'- cGCGUCGACUGUAgCGCaugGaCGC-CGACa -3'
miRNA:   3'- -UGCAGCUGACGU-GCGg--C-GCGcGCUGa -5'
24943 3' -60.1 NC_005284.1 + 45652 0.68 0.346026
Target:  5'- gGCGUCGAUagccgagUGCGCGggcgaCGCGCcacGCGGCg -3'
miRNA:   3'- -UGCAGCUG-------ACGUGCg----GCGCG---CGCUGa -5'
24943 3' -60.1 NC_005284.1 + 31429 0.68 0.338854
Target:  5'- cGCGggCGAC-GUGCGCCGC-UGCGGCg -3'
miRNA:   3'- -UGCa-GCUGaCGUGCGGCGcGCGCUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.