miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24943 3' -60.1 NC_005284.1 + 956 0.67 0.406335
Target:  5'- gUGcCGAggUGUACGCCG-GCGCGACg -3'
miRNA:   3'- uGCaGCUg-ACGUGCGGCgCGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 4122 0.69 0.293826
Target:  5'- cCGgaagCGAUgGCAaucCGCCGUGCGCGAUg -3'
miRNA:   3'- uGCa---GCUGaCGU---GCGGCGCGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 6531 0.71 0.229378
Target:  5'- -aGUCGACgaagGCGCuCagGCGCGCGACa -3'
miRNA:   3'- ugCAGCUGa---CGUGcGg-CGCGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 7540 0.68 0.370709
Target:  5'- aACGaCGAagggcaaaacauuCUGCGUGCCGCGCguGCGACg -3'
miRNA:   3'- -UGCaGCU-------------GACGUGCGGCGCG--CGCUGa -5'
24943 3' -60.1 NC_005284.1 + 8616 0.71 0.239426
Target:  5'- uCGUCGACgGCcggcucguauuucaAUGCgGUGCGCGACg -3'
miRNA:   3'- uGCAGCUGaCG--------------UGCGgCGCGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 8802 0.73 0.172699
Target:  5'- cGCGgaUCGaACUGCGCGCCGCgucgaGCGCGcGCa -3'
miRNA:   3'- -UGC--AGC-UGACGUGCGGCG-----CGCGC-UGa -5'
24943 3' -60.1 NC_005284.1 + 8877 0.75 0.125425
Target:  5'- aACGaCGuGCUGCGCaUCGCGCGCGACa -3'
miRNA:   3'- -UGCaGC-UGACGUGcGGCGCGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 8977 0.71 0.223636
Target:  5'- cGCGUCGAgcggUUGCcgugGUCGCGCGCGAUg -3'
miRNA:   3'- -UGCAGCU----GACGug--CGGCGCGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 9238 0.71 0.218016
Target:  5'- gGCGcUGAC-GCGCGCgGCGgGCGGCa -3'
miRNA:   3'- -UGCaGCUGaCGUGCGgCGCgCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 9240 0.73 0.172699
Target:  5'- uGCGcCGAacucUUGCccAUGCCGCGCGCGAUa -3'
miRNA:   3'- -UGCaGCU----GACG--UGCGGCGCGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 9327 0.67 0.406335
Target:  5'- aGCGUaucCGuGCcGCcCGCCGCGCGCGuCa -3'
miRNA:   3'- -UGCA---GC-UGaCGuGCGGCGCGCGCuGa -5'
24943 3' -60.1 NC_005284.1 + 9586 0.66 0.443093
Target:  5'- aGCGcagggCGAUcGCGCuGCCGCG-GCGGCg -3'
miRNA:   3'- -UGCa----GCUGaCGUG-CGGCGCgCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 9865 0.73 0.168218
Target:  5'- gACGUUGGC-GCGCGCCGU-UGCGACg -3'
miRNA:   3'- -UGCAGCUGaCGUGCGGCGcGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 9913 0.68 0.338854
Target:  5'- aGCGUCG-CU-CGCGCuCGCGCagcaGCGGCg -3'
miRNA:   3'- -UGCAGCuGAcGUGCG-GCGCG----CGCUGa -5'
24943 3' -60.1 NC_005284.1 + 9997 0.67 0.415345
Target:  5'- uACGcCGcuGCUGCGCGagCGCGaGCGACg -3'
miRNA:   3'- -UGCaGC--UGACGUGCg-GCGCgCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 10385 0.66 0.440271
Target:  5'- -aG-CGGCUGCgcacgaagcaagagGCGUCGCGgGCGGCc -3'
miRNA:   3'- ugCaGCUGACG--------------UGCGGCGCgCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 10496 0.73 0.172246
Target:  5'- uAUGcCGACUGCGCgucaucgGCCGCcCGCGACg -3'
miRNA:   3'- -UGCaGCUGACGUG-------CGGCGcGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 10660 0.71 0.247356
Target:  5'- cGCGagGAacuggUGCGCGCCGCggGCGCGAUc -3'
miRNA:   3'- -UGCagCUg----ACGUGCGGCG--CGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 10751 0.66 0.481652
Target:  5'- gUGUCGAUcGCGC-CCGCGgCGCGcACc -3'
miRNA:   3'- uGCAGCUGaCGUGcGGCGC-GCGC-UGa -5'
24943 3' -60.1 NC_005284.1 + 11172 0.69 0.293826
Target:  5'- cGCGcCG-CgGC-CGCCGCGCGCGGa- -3'
miRNA:   3'- -UGCaGCuGaCGuGCGGCGCGCGCUga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.