miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24943 3' -60.1 NC_005284.1 + 11266 0.71 0.247356
Target:  5'- uCGUCGAaggcUUGCuuuCCGCGCGCGGCg -3'
miRNA:   3'- uGCAGCU----GACGugcGGCGCGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 11801 0.67 0.415345
Target:  5'- cACGgccgaGGCggaGCAgGUCGCGCGCGAg- -3'
miRNA:   3'- -UGCag---CUGa--CGUgCGGCGCGCGCUga -5'
24943 3' -60.1 NC_005284.1 + 11914 0.69 0.323307
Target:  5'- aACG-CGagccGCUGCucgagauagccGCGCuCGCGCGCGACc -3'
miRNA:   3'- -UGCaGC----UGACG-----------UGCG-GCGCGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 13995 0.7 0.279889
Target:  5'- gGCG-CGGCUGCGCgguaaGCgGgGCGUGACg -3'
miRNA:   3'- -UGCaGCUGACGUG-----CGgCgCGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 14237 0.66 0.468936
Target:  5'- cCGUCGguguGCUGUugGCCGgGUugcuugagacggauGCGGCg -3'
miRNA:   3'- uGCAGC----UGACGugCGGCgCG--------------CGCUGa -5'
24943 3' -60.1 NC_005284.1 + 14384 0.71 0.235245
Target:  5'- -gGUCGACUGCACGgaaauCgGCGC-CGACa -3'
miRNA:   3'- ugCAGCUGACGUGC-----GgCGCGcGCUGa -5'
24943 3' -60.1 NC_005284.1 + 14500 0.67 0.433726
Target:  5'- gACGUCGACUGCAUGUguccaUGgaaGCGCaGCa -3'
miRNA:   3'- -UGCAGCUGACGUGCG-----GCg--CGCGcUGa -5'
24943 3' -60.1 NC_005284.1 + 14593 0.69 0.308297
Target:  5'- aGCGUCGGCgaugGC-UGCUGCGCGuCGGa- -3'
miRNA:   3'- -UGCAGCUGa---CGuGCGGCGCGC-GCUga -5'
24943 3' -60.1 NC_005284.1 + 14944 0.72 0.206077
Target:  5'- aACGUCGAUUuggcgugaauaacGCGCGCCGUucggcggcuuccuGUGCGACa -3'
miRNA:   3'- -UGCAGCUGA-------------CGUGCGGCG-------------CGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 15347 0.67 0.424476
Target:  5'- -gGUCGGCUGUgccgauGCGCCGgGaUGCGAa- -3'
miRNA:   3'- ugCAGCUGACG------UGCGGCgC-GCGCUga -5'
24943 3' -60.1 NC_005284.1 + 15422 0.68 0.338854
Target:  5'- --aUCGGcCUGCACGCCGa--GCGACa -3'
miRNA:   3'- ugcAGCU-GACGUGCGGCgcgCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 15450 0.78 0.072419
Target:  5'- gGCGUgcaCGACUGCuACGCgauCGUGCGCGACUg -3'
miRNA:   3'- -UGCA---GCUGACG-UGCG---GCGCGCGCUGA- -5'
24943 3' -60.1 NC_005284.1 + 15573 0.66 0.452572
Target:  5'- -aGUCGGgUaacGCgACGCCGCGCuCGGCg -3'
miRNA:   3'- ugCAGCUgA---CG-UGCGGCGCGcGCUGa -5'
24943 3' -60.1 NC_005284.1 + 15729 0.71 0.235245
Target:  5'- cUGUCGAC-GCGCGCgGUGUGgGGCg -3'
miRNA:   3'- uGCAGCUGaCGUGCGgCGCGCgCUGa -5'
24943 3' -60.1 NC_005284.1 + 15884 0.68 0.346829
Target:  5'- uCGUCGACcGCagagGCGgUGCGCGCG-CUa -3'
miRNA:   3'- uGCAGCUGaCG----UGCgGCGCGCGCuGA- -5'
24943 3' -60.1 NC_005284.1 + 15937 0.66 0.491546
Target:  5'- gGCGUUc-CUG-ACGUCgGCGCGCGACg -3'
miRNA:   3'- -UGCAGcuGACgUGCGG-CGCGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 16692 0.68 0.354938
Target:  5'- gGCGUCGGCgUGC-CGCUGaCGUcCGACg -3'
miRNA:   3'- -UGCAGCUG-ACGuGCGGC-GCGcGCUGa -5'
24943 3' -60.1 NC_005284.1 + 16775 0.7 0.253602
Target:  5'- cGCGUCgGACgucagcgGCACGCCGaCGC-CGGCc -3'
miRNA:   3'- -UGCAG-CUGa------CGUGCGGC-GCGcGCUGa -5'
24943 3' -60.1 NC_005284.1 + 17077 0.69 0.300994
Target:  5'- cGCGUCGGCgauCGuCGCCGUGUGCG-Cg -3'
miRNA:   3'- -UGCAGCUGac-GU-GCGGCGCGCGCuGa -5'
24943 3' -60.1 NC_005284.1 + 17722 0.79 0.068494
Target:  5'- gGCGuUCGGCUGCACGUCGCagGCGCaGGCg -3'
miRNA:   3'- -UGC-AGCUGACGUGCGGCG--CGCG-CUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.