Results 61 - 80 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24943 | 3' | -60.1 | NC_005284.1 | + | 31429 | 0.68 | 0.338854 |
Target: 5'- cGCGggCGAC-GUGCGCCGC-UGCGGCg -3' miRNA: 3'- -UGCa-GCUGaCGUGCGGCGcGCGCUGa -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 32796 | 0.68 | 0.346829 |
Target: 5'- uGCGUCGGcCUGCGCggGuuGCGgGgCGGCg -3' miRNA: 3'- -UGCAGCU-GACGUG--CggCGCgC-GCUGa -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 33430 | 0.72 | 0.191703 |
Target: 5'- cACGUCG-UUGCACGCC-UGCGCGGu- -3' miRNA: 3'- -UGCAGCuGACGUGCGGcGCGCGCUga -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 33559 | 0.68 | 0.363179 |
Target: 5'- uAUGUCGGCaGCAgCGCCGgccgacgGCGCGugUa -3' miRNA: 3'- -UGCAGCUGaCGU-GCGGCg------CGCGCugA- -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 33769 | 0.66 | 0.462161 |
Target: 5'- cUGUCGAa-GUGCGCCG-GCGcCGACUu -3' miRNA: 3'- uGCAGCUgaCGUGCGGCgCGC-GCUGA- -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 33964 | 0.68 | 0.354938 |
Target: 5'- uCGUCGGCcgGCGCuGCUGCGgGCuGCUc -3' miRNA: 3'- uGCAGCUGa-CGUG-CGGCGCgCGcUGA- -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 35153 | 0.73 | 0.177287 |
Target: 5'- -gGUCGGCuccguUGUAUGCCGUGUGCGAUc -3' miRNA: 3'- ugCAGCUG-----ACGUGCGGCGCGCGCUGa -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 35365 | 0.68 | 0.346829 |
Target: 5'- cGCGUCGACUGUAgCGCaugGaCGC-CGACa -3' miRNA: 3'- -UGCAGCUGACGU-GCGg--C-GCGcGCUGa -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 36866 | 0.7 | 0.289589 |
Target: 5'- cGCcUCGGCUGCACGCaguucguucuccuucUGCuGCGCGAUc -3' miRNA: 3'- -UGcAGCUGACGUGCG---------------GCG-CGCGCUGa -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 37108 | 0.67 | 0.397448 |
Target: 5'- gGCGUCG-C-GCACGaUCGCGCGCagguaGACg -3' miRNA: 3'- -UGCAGCuGaCGUGC-GGCGCGCG-----CUGa -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 37194 | 0.77 | 0.0955 |
Target: 5'- gGCGUCuacCUGCGCGCgauCGUGCGCGACg -3' miRNA: 3'- -UGCAGcu-GACGUGCG---GCGCGCGCUGa -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 38957 | 0.68 | 0.358218 |
Target: 5'- uCGUCGACcuucgUGCGCgaugcugauccgcggGCUGCGCGCuGGCg -3' miRNA: 3'- uGCAGCUG-----ACGUG---------------CGGCGCGCG-CUGa -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 39687 | 0.67 | 0.424476 |
Target: 5'- uGC-UCGACaaGCGCGCCGCGagGCaGACg -3' miRNA: 3'- -UGcAGCUGa-CGUGCGGCGCg-CG-CUGa -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 40803 | 0.7 | 0.266484 |
Target: 5'- aGCGU--ACUGCugGCC-CGCGCGAg- -3' miRNA: 3'- -UGCAgcUGACGugCGGcGCGCGCUga -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 41031 | 0.66 | 0.471856 |
Target: 5'- gACGUucaCGcauACUGCGCGCCGacguuucuCGCGgGGCg -3' miRNA: 3'- -UGCA---GC---UGACGUGCGGC--------GCGCgCUGa -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 43366 | 0.67 | 0.415345 |
Target: 5'- -aGUCGAUacaGCAgGCCGUcCGCGACc -3' miRNA: 3'- ugCAGCUGa--CGUgCGGCGcGCGCUGa -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 43870 | 0.7 | 0.27312 |
Target: 5'- cCGUUGAUgauccGCGCGUCGUGUGCGAa- -3' miRNA: 3'- uGCAGCUGa----CGUGCGGCGCGCGCUga -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 45652 | 0.68 | 0.346026 |
Target: 5'- gGCGUCGAUagccgagUGCGCGggcgaCGCGCcacGCGGCg -3' miRNA: 3'- -UGCAGCUG-------ACGUGCg----GCGCG---CGCUGa -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 46484 | 0.66 | 0.490552 |
Target: 5'- gGCGUUaGCUGCucgugcauggccgACGCCGCaCGgGACg -3' miRNA: 3'- -UGCAGcUGACG-------------UGCGGCGcGCgCUGa -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 47565 | 0.67 | 0.424476 |
Target: 5'- uGC-UCGACUGCugcaugGCgGUGCGUGACg -3' miRNA: 3'- -UGcAGCUGACGug----CGgCGCGCGCUGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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