miRNA display CGI


Results 61 - 80 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24943 3' -60.1 NC_005284.1 + 14944 0.72 0.206077
Target:  5'- aACGUCGAUUuggcgugaauaacGCGCGCCGUucggcggcuuccuGUGCGACa -3'
miRNA:   3'- -UGCAGCUGA-------------CGUGCGGCG-------------CGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 14593 0.69 0.308297
Target:  5'- aGCGUCGGCgaugGC-UGCUGCGCGuCGGa- -3'
miRNA:   3'- -UGCAGCUGa---CGuGCGGCGCGC-GCUga -5'
24943 3' -60.1 NC_005284.1 + 14500 0.67 0.433726
Target:  5'- gACGUCGACUGCAUGUguccaUGgaaGCGCaGCa -3'
miRNA:   3'- -UGCAGCUGACGUGCG-----GCg--CGCGcUGa -5'
24943 3' -60.1 NC_005284.1 + 14384 0.71 0.235245
Target:  5'- -gGUCGACUGCACGgaaauCgGCGC-CGACa -3'
miRNA:   3'- ugCAGCUGACGUGC-----GgCGCGcGCUGa -5'
24943 3' -60.1 NC_005284.1 + 14237 0.66 0.468936
Target:  5'- cCGUCGguguGCUGUugGCCGgGUugcuugagacggauGCGGCg -3'
miRNA:   3'- uGCAGC----UGACGugCGGCgCG--------------CGCUGa -5'
24943 3' -60.1 NC_005284.1 + 13995 0.7 0.279889
Target:  5'- gGCG-CGGCUGCGCgguaaGCgGgGCGUGACg -3'
miRNA:   3'- -UGCaGCUGACGUG-----CGgCgCGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 11914 0.69 0.323307
Target:  5'- aACG-CGagccGCUGCucgagauagccGCGCuCGCGCGCGACc -3'
miRNA:   3'- -UGCaGC----UGACG-----------UGCG-GCGCGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 11801 0.67 0.415345
Target:  5'- cACGgccgaGGCggaGCAgGUCGCGCGCGAg- -3'
miRNA:   3'- -UGCag---CUGa--CGUgCGGCGCGCGCUga -5'
24943 3' -60.1 NC_005284.1 + 11266 0.71 0.247356
Target:  5'- uCGUCGAaggcUUGCuuuCCGCGCGCGGCg -3'
miRNA:   3'- uGCAGCU----GACGugcGGCGCGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 11172 0.69 0.293826
Target:  5'- cGCGcCG-CgGC-CGCCGCGCGCGGa- -3'
miRNA:   3'- -UGCaGCuGaCGuGCGGCGCGCGCUga -5'
24943 3' -60.1 NC_005284.1 + 10751 0.66 0.481652
Target:  5'- gUGUCGAUcGCGC-CCGCGgCGCGcACc -3'
miRNA:   3'- uGCAGCUGaCGUGcGGCGC-GCGC-UGa -5'
24943 3' -60.1 NC_005284.1 + 10660 0.71 0.247356
Target:  5'- cGCGagGAacuggUGCGCGCCGCggGCGCGAUc -3'
miRNA:   3'- -UGCagCUg----ACGUGCGGCG--CGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 10496 0.73 0.172246
Target:  5'- uAUGcCGACUGCGCgucaucgGCCGCcCGCGACg -3'
miRNA:   3'- -UGCaGCUGACGUG-------CGGCGcGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 10385 0.66 0.440271
Target:  5'- -aG-CGGCUGCgcacgaagcaagagGCGUCGCGgGCGGCc -3'
miRNA:   3'- ugCaGCUGACG--------------UGCGGCGCgCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 9997 0.67 0.415345
Target:  5'- uACGcCGcuGCUGCGCGagCGCGaGCGACg -3'
miRNA:   3'- -UGCaGC--UGACGUGCg-GCGCgCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 9913 0.68 0.338854
Target:  5'- aGCGUCG-CU-CGCGCuCGCGCagcaGCGGCg -3'
miRNA:   3'- -UGCAGCuGAcGUGCG-GCGCG----CGCUGa -5'
24943 3' -60.1 NC_005284.1 + 9865 0.73 0.168218
Target:  5'- gACGUUGGC-GCGCGCCGU-UGCGACg -3'
miRNA:   3'- -UGCAGCUGaCGUGCGGCGcGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 9586 0.66 0.443093
Target:  5'- aGCGcagggCGAUcGCGCuGCCGCG-GCGGCg -3'
miRNA:   3'- -UGCa----GCUGaCGUG-CGGCGCgCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 9327 0.67 0.406335
Target:  5'- aGCGUaucCGuGCcGCcCGCCGCGCGCGuCa -3'
miRNA:   3'- -UGCA---GC-UGaCGuGCGGCGCGCGCuGa -5'
24943 3' -60.1 NC_005284.1 + 9240 0.73 0.172699
Target:  5'- uGCGcCGAacucUUGCccAUGCCGCGCGCGAUa -3'
miRNA:   3'- -UGCaGCU----GACG--UGCGGCGCGCGCUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.