miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24943 3' -60.1 NC_005284.1 + 20944 0.7 0.279889
Target:  5'- aGC-UCG-CUGCACGCCGCGUGa-ACUg -3'
miRNA:   3'- -UGcAGCuGACGUGCGGCGCGCgcUGA- -5'
24943 3' -60.1 NC_005284.1 + 9238 0.71 0.218016
Target:  5'- gGCGcUGAC-GCGCGCgGCGgGCGGCa -3'
miRNA:   3'- -UGCaGCUGaCGUGCGgCGCgCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 6531 0.71 0.229378
Target:  5'- -aGUCGACgaagGCGCuCagGCGCGCGACa -3'
miRNA:   3'- ugCAGCUGa---CGUGcGg-CGCGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 14384 0.71 0.235245
Target:  5'- -gGUCGACUGCACGgaaauCgGCGC-CGACa -3'
miRNA:   3'- ugCAGCUGACGUGC-----GgCGCGcGCUGa -5'
24943 3' -60.1 NC_005284.1 + 15729 0.71 0.235245
Target:  5'- cUGUCGAC-GCGCGCgGUGUGgGGCg -3'
miRNA:   3'- uGCAGCUGaCGUGCGgCGCGCgCUGa -5'
24943 3' -60.1 NC_005284.1 + 8616 0.71 0.239426
Target:  5'- uCGUCGACgGCcggcucguauuucaAUGCgGUGCGCGACg -3'
miRNA:   3'- uGCAGCUGaCG--------------UGCGgCGCGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 10660 0.71 0.247356
Target:  5'- cGCGagGAacuggUGCGCGCCGCggGCGCGAUc -3'
miRNA:   3'- -UGCagCUg----ACGUGCGGCG--CGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 18911 0.7 0.253602
Target:  5'- -aGUCGGCgcuugGCACggaGCUGCGCGCGcCg -3'
miRNA:   3'- ugCAGCUGa----CGUG---CGGCGCGCGCuGa -5'
24943 3' -60.1 NC_005284.1 + 43870 0.7 0.27312
Target:  5'- cCGUUGAUgauccGCGCGUCGUGUGCGAa- -3'
miRNA:   3'- uGCAGCUGa----CGUGCGGCGCGCGCUga -5'
24943 3' -60.1 NC_005284.1 + 14944 0.72 0.206077
Target:  5'- aACGUCGAUUuggcgugaauaacGCGCGCCGUucggcggcuuccuGUGCGACa -3'
miRNA:   3'- -UGCAGCUGA-------------CGUGCGGCG-------------CGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 49329 0.72 0.201877
Target:  5'- -gGUUGGCacgGCACG-CGUGCGCGACg -3'
miRNA:   3'- ugCAGCUGa--CGUGCgGCGCGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 27971 0.72 0.201877
Target:  5'- gACGUCGAaUGCugaaGCCGCucGCGCGAUg -3'
miRNA:   3'- -UGCAGCUgACGug--CGGCG--CGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 17722 0.79 0.068494
Target:  5'- gGCGuUCGGCUGCACGUCGCagGCGCaGGCg -3'
miRNA:   3'- -UGC-AGCUGACGUGCGGCG--CGCG-CUGa -5'
24943 3' -60.1 NC_005284.1 + 15450 0.78 0.072419
Target:  5'- gGCGUgcaCGACUGCuACGCgauCGUGCGCGACUg -3'
miRNA:   3'- -UGCA---GCUGACG-UGCG---GCGCGCGCUGA- -5'
24943 3' -60.1 NC_005284.1 + 8877 0.75 0.125425
Target:  5'- aACGaCGuGCUGCGCaUCGCGCGCGACa -3'
miRNA:   3'- -UGCaGC-UGACGUGcGGCGCGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 51644 0.73 0.159568
Target:  5'- uGC-UCGGCUGUAUGUgaaucacgCGCGCGCGACg -3'
miRNA:   3'- -UGcAGCUGACGUGCG--------GCGCGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 35153 0.73 0.177287
Target:  5'- -gGUCGGCuccguUGUAUGCCGUGUGCGAUc -3'
miRNA:   3'- ugCAGCUG-----ACGUGCGGCGCGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 21607 0.73 0.181508
Target:  5'- aGCGUUGGgcaagauCUcGCGCGCCGCGCuCGACg -3'
miRNA:   3'- -UGCAGCU-------GA-CGUGCGGCGCGcGCUGa -5'
24943 3' -60.1 NC_005284.1 + 33430 0.72 0.191703
Target:  5'- cACGUCG-UUGCACGCC-UGCGCGGu- -3'
miRNA:   3'- -UGCAGCuGACGUGCGGcGCGCGCUga -5'
24943 3' -60.1 NC_005284.1 + 21151 0.72 0.191703
Target:  5'- cGCGU-GAUga-AUGCCGCGCGCGGCUc -3'
miRNA:   3'- -UGCAgCUGacgUGCGGCGCGCGCUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.