miRNA display CGI


Results 61 - 80 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24943 3' -60.1 NC_005284.1 + 18180 0.7 0.27312
Target:  5'- aACG-CGAuaCUGCuGCGCCGCGagcuCGCGGCUu -3'
miRNA:   3'- -UGCaGCU--GACG-UGCGGCGC----GCGCUGA- -5'
24943 3' -60.1 NC_005284.1 + 49472 0.7 0.27312
Target:  5'- --uUCGGCUGCuuGCC-CGUGCGGCg -3'
miRNA:   3'- ugcAGCUGACGugCGGcGCGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 40803 0.7 0.266484
Target:  5'- aGCGU--ACUGCugGCC-CGCGCGAg- -3'
miRNA:   3'- -UGCAgcUGACGugCGGcGCGCGCUga -5'
24943 3' -60.1 NC_005284.1 + 16775 0.7 0.253602
Target:  5'- cGCGUCgGACgucagcgGCACGCCGaCGC-CGGCc -3'
miRNA:   3'- -UGCAG-CUGa------CGUGCGGC-GCGcGCUGa -5'
24943 3' -60.1 NC_005284.1 + 11266 0.71 0.247356
Target:  5'- uCGUCGAaggcUUGCuuuCCGCGCGCGGCg -3'
miRNA:   3'- uGCAGCU----GACGugcGGCGCGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 15422 0.68 0.338854
Target:  5'- --aUCGGcCUGCACGCCGa--GCGACa -3'
miRNA:   3'- ugcAGCU-GACGUGCGGCgcgCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 45652 0.68 0.346026
Target:  5'- gGCGUCGAUagccgagUGCGCGggcgaCGCGCcacGCGGCg -3'
miRNA:   3'- -UGCAGCUG-------ACGUGCg----GCGCG---CGCUGa -5'
24943 3' -60.1 NC_005284.1 + 35365 0.68 0.346829
Target:  5'- cGCGUCGACUGUAgCGCaugGaCGC-CGACa -3'
miRNA:   3'- -UGCAGCUGACGU-GCGg--C-GCGcGCUGa -5'
24943 3' -60.1 NC_005284.1 + 10751 0.66 0.481652
Target:  5'- gUGUCGAUcGCGC-CCGCGgCGCGcACc -3'
miRNA:   3'- uGCAGCUGaCGUGcGGCGC-GCGC-UGa -5'
24943 3' -60.1 NC_005284.1 + 31418 0.66 0.452572
Target:  5'- aGCG-CGuguuCUGCGCGUCGCuCGcCGACg -3'
miRNA:   3'- -UGCaGCu---GACGUGCGGCGcGC-GCUGa -5'
24943 3' -60.1 NC_005284.1 + 49712 0.66 0.452572
Target:  5'- cCGUCGGaacGC-CGCUGaCGCGCGAUc -3'
miRNA:   3'- uGCAGCUga-CGuGCGGC-GCGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 15573 0.66 0.452572
Target:  5'- -aGUCGGgUaacGCgACGCCGCGCuCGGCg -3'
miRNA:   3'- ugCAGCUgA---CG-UGCGGCGCGcGCUGa -5'
24943 3' -60.1 NC_005284.1 + 51348 0.66 0.443093
Target:  5'- cCGuUCGAa-GCACGUucuuCGCGCGUGGCUc -3'
miRNA:   3'- uGC-AGCUgaCGUGCG----GCGCGCGCUGA- -5'
24943 3' -60.1 NC_005284.1 + 14500 0.67 0.433726
Target:  5'- gACGUCGACUGCAUGUguccaUGgaaGCGCaGCa -3'
miRNA:   3'- -UGCAGCUGACGUGCG-----GCg--CGCGcUGa -5'
24943 3' -60.1 NC_005284.1 + 15347 0.67 0.424476
Target:  5'- -gGUCGGCUGUgccgauGCGCCGgGaUGCGAa- -3'
miRNA:   3'- ugCAGCUGACG------UGCGGCgC-GCGCUga -5'
24943 3' -60.1 NC_005284.1 + 9997 0.67 0.415345
Target:  5'- uACGcCGcuGCUGCGCGagCGCGaGCGACg -3'
miRNA:   3'- -UGCaGC--UGACGUGCg-GCGCgCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 43366 0.67 0.415345
Target:  5'- -aGUCGAUacaGCAgGCCGUcCGCGACc -3'
miRNA:   3'- ugCAGCUGa--CGUgCGGCGcGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 9327 0.67 0.406335
Target:  5'- aGCGUaucCGuGCcGCcCGCCGCGCGCGuCa -3'
miRNA:   3'- -UGCA---GC-UGaCGuGCGGCGCGCGCuGa -5'
24943 3' -60.1 NC_005284.1 + 21646 0.67 0.388688
Target:  5'- cGCGUCGA----ACGCC-CGCGCGGCc -3'
miRNA:   3'- -UGCAGCUgacgUGCGGcGCGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 33559 0.68 0.363179
Target:  5'- uAUGUCGGCaGCAgCGCCGgccgacgGCGCGugUa -3'
miRNA:   3'- -UGCAGCUGaCGU-GCGGCg------CGCGCugA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.