miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24943 3' -60.1 NC_005284.1 + 54767 0.66 0.490552
Target:  5'- cACGUCaccgcaaccGCUcGCGCGCCGUcuucgccGCGUGACa -3'
miRNA:   3'- -UGCAGc--------UGA-CGUGCGGCG-------CGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 25668 0.69 0.331013
Target:  5'- uCGUCGAaacagucgGCAacCGCCGCGCG-GACg -3'
miRNA:   3'- uGCAGCUga------CGU--GCGGCGCGCgCUGa -5'
24943 3' -60.1 NC_005284.1 + 11914 0.69 0.323307
Target:  5'- aACG-CGagccGCUGCucgagauagccGCGCuCGCGCGCGACc -3'
miRNA:   3'- -UGCaGC----UGACG-----------UGCG-GCGCGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 37194 0.77 0.0955
Target:  5'- gGCGUCuacCUGCGCGCgauCGUGCGCGACg -3'
miRNA:   3'- -UGCAGcu-GACGUGCG---GCGCGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 15573 0.66 0.452572
Target:  5'- -aGUCGGgUaacGCgACGCCGCGCuCGGCg -3'
miRNA:   3'- ugCAGCUgA---CG-UGCGGCGCGcGCUGa -5'
24943 3' -60.1 NC_005284.1 + 51348 0.66 0.443093
Target:  5'- cCGuUCGAa-GCACGUucuuCGCGCGUGGCUc -3'
miRNA:   3'- uGC-AGCUgaCGUGCG----GCGCGCGCUGA- -5'
24943 3' -60.1 NC_005284.1 + 15347 0.67 0.424476
Target:  5'- -gGUCGGCUGUgccgauGCGCCGgGaUGCGAa- -3'
miRNA:   3'- ugCAGCUGACG------UGCGGCgC-GCGCUga -5'
24943 3' -60.1 NC_005284.1 + 9997 0.67 0.415345
Target:  5'- uACGcCGcuGCUGCGCGagCGCGaGCGACg -3'
miRNA:   3'- -UGCaGC--UGACGUGCg-GCGCgCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 21646 0.67 0.388688
Target:  5'- cGCGUCGA----ACGCC-CGCGCGGCc -3'
miRNA:   3'- -UGCAGCUgacgUGCGGcGCGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 21755 0.68 0.338854
Target:  5'- -gGUCGACgGCGgccacCGCCGaCGCgGCGGCa -3'
miRNA:   3'- ugCAGCUGaCGU-----GCGGC-GCG-CGCUGa -5'
24943 3' -60.1 NC_005284.1 + 35365 0.68 0.346829
Target:  5'- cGCGUCGACUGUAgCGCaugGaCGC-CGACa -3'
miRNA:   3'- -UGCAGCUGACGU-GCGg--C-GCGcGCUGa -5'
24943 3' -60.1 NC_005284.1 + 9327 0.67 0.406335
Target:  5'- aGCGUaucCGuGCcGCcCGCCGCGCGCGuCa -3'
miRNA:   3'- -UGCA---GC-UGaCGuGCGGCGCGCGCuGa -5'
24943 3' -60.1 NC_005284.1 + 10751 0.66 0.481652
Target:  5'- gUGUCGAUcGCGC-CCGCGgCGCGcACc -3'
miRNA:   3'- uGCAGCUGaCGUGcGGCGC-GCGC-UGa -5'
24943 3' -60.1 NC_005284.1 + 45652 0.68 0.346026
Target:  5'- gGCGUCGAUagccgagUGCGCGggcgaCGCGCcacGCGGCg -3'
miRNA:   3'- -UGCAGCUG-------ACGUGCg----GCGCG---CGCUGa -5'
24943 3' -60.1 NC_005284.1 + 31418 0.66 0.452572
Target:  5'- aGCG-CGuguuCUGCGCGUCGCuCGcCGACg -3'
miRNA:   3'- -UGCaGCu---GACGUGCGGCGcGC-GCUGa -5'
24943 3' -60.1 NC_005284.1 + 43366 0.67 0.415345
Target:  5'- -aGUCGAUacaGCAgGCCGUcCGCGACc -3'
miRNA:   3'- ugCAGCUGa--CGUgCGGCGcGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 15422 0.68 0.338854
Target:  5'- --aUCGGcCUGCACGCCGa--GCGACa -3'
miRNA:   3'- ugcAGCU-GACGUGCGGCgcgCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 48830 0.69 0.331013
Target:  5'- uCG-CGGC-GCACGCCGCGCGgguUGAUg -3'
miRNA:   3'- uGCaGCUGaCGUGCGGCGCGC---GCUGa -5'
24943 3' -60.1 NC_005284.1 + 49712 0.66 0.452572
Target:  5'- cCGUCGGaacGC-CGCUGaCGCGCGAUc -3'
miRNA:   3'- uGCAGCUga-CGuGCGGC-GCGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 14500 0.67 0.433726
Target:  5'- gACGUCGACUGCAUGUguccaUGgaaGCGCaGCa -3'
miRNA:   3'- -UGCAGCUGACGUGCG-----GCg--CGCGcUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.